YRC Public Data Repository - Protein Structure Prediction

Protein:	YCHJ_ECOLI
Organism:	Escherichia coli
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCHJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|209772350, gi... - pir\|\|F85703 hypothetical protein ychJ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... YCHJ_ECO57 - UPF0225 protein YchJ OS=Escherichia coli O157:H7 GN=ychJ PE=3 SV=1 gi\|15801461, gi\|... - gi\|15801461\|ref\|NP_287478.1\| hypothetical protein Z2009 [Escherichia coli O157:H7 EDL933], gi\|125149... gi\|15830989, gi\|... - gi\|15830989\|ref\|NP_309762.1\| hypothetical protein ECs1735 [Escherichia coli O157:H7 str. Sakai], gi\|... YCHJ_ECOLC - UPF0225 protein YchJ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ychJ PE=3 SV=1 gi\|124528385, gi... - gi\|124528385\|ref\|ZP_01699695.1\| SEC-C motif domain protein [Escherichia coli B], gi\|124500617\|gb\|EAY... YCHJ_ECOHS - UPF0225 protein YchJ OS=Escherichia coli O9:H4 (strain HS) GN=ychJ PE=3 SV=1 YCHJ_ECO24 - UPF0225 protein YchJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ychJ PE=3 SV=1 gi\|253977429, gi... - gi\|254288122\|ref\|YP_003053870.1\| hypothetical protein ECD_01209 [Escherichia coli BL21(DE3)], gi\|253... gi\|251784739, gi... - gi\|251784739\|ref\|YP_002999043.1\| hypothetical protein B21_01219 [Escherichia coli BL21], gi\|24237701... gi\|254592103, gi... - gi\|254792703\|ref\|YP_003077540.1\| hypothetical protein ECSP_1625 [Escherichia coli O157:H7 str. TW143... gi\|253973215, gi... - gi\|254161314\|ref\|YP_003044422.1\| hypothetical protein ECB_01209 [Escherichia coli B str. REL606], gi...	163.0	[0..1]	[152..1]
gi\|161485792 - gi\|161485792\|ref\|NP_707139.3\| hypothetical protein SF1233 [Shigella flexneri 2a str. 301] gi\|161486501 - gi\|161486501\|ref\|NP_836924.2\| hypothetical protein S1319 [Shigella flexneri 2a str. 2457T] YCHJ_SHIF8 - UPF0225 protein YchJ OS=Shigella flexneri serotype 5b (strain 8401) GN=ychJ PE=3 SV=1 YCHJ_SHIFL - UPF0225 protein YchJ OS=Shigella flexneri GN=ychJ PE=3 SV=2	162.0	[0..1]	[152..1]
sp\|B7UQC5\|YCHJ_ECO27 - UPF0225 protein ychJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ychJ PE=3 SV=1 YCHJ_ECOK1 - UPF0225 protein YchJ OS=Escherichia coli O1:K1 / APEC GN=ychJ PE=3 SV=1 YCHJ_ECO45 - UPF0225 protein YchJ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ychJ PE=3 SV=1 YCHJ_ECOL6 - UPF0225 protein YchJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ychJ PE=3 SV=... YCHJ_ECO27 - UPF0225 protein YchJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ychJ PE=3 SV=1 gi\|162138447 - gi\|162138447\|ref\|YP_540440.2\| hypothetical protein UTI89_C1429 [Escherichia coli UTI89] YCHJ_ECOL6 - UPF0225 protein ychJ OS=Escherichia coli O6 GN=ychJ PE=3 SV=2	162.0	[0..1]	[152..1]
gi\|226899953, gi... - gi\|237705196\|ref\|ZP_04535677.1\| ychJ [Escherichia sp. 3_2_53FAA], gi\|226899953\|gb\|EEH86212.1\| ychJ [... gi\|26247562, gi\|... - gi\|26247562\|ref\|NP_753602.1\| hypothetical protein c1697 [Escherichia coli CFT073], gi\|26107964\|gb\|AA... gi\|91072028, gi\|... - gi\|91210454\|ref\|YP_540440.1\| hypothetical protein YchJ [Escherichia coli UTI89], gi\|91072028\|gb\|ABE0...	161.0	[0..2]	[152..9]
YCHJ_ECOL5 - UPF0225 protein YchJ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ychJ PE=3 SV=1	161.0	[0..1]	[152..1]
YCHJ_SHIDS - UPF0225 protein YchJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ychJ PE=3 SV=1	160.0	[0..1]	[152..1]
YCHJ_SALTY - UPF0225 protein YchJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ychJ PE=3 SV... lcl\|NC_016856.1_... - [gene=ychJ] [protein=hypothetical protein] [protein_id=YP_005237683.1] [location=1861748..1862206] YCHJ_SALTY - UPF0225 protein ychJ OS=Salmonella typhimurium GN=ychJ PE=3 SV=1 YCHJ_SALTY - UPF0225 protein ychJ OS=Salmonella typhimurium GN=ychJ PE=3 SV=1	159.0	[0..1]	[152..1]
YCHJ_SALPC - UPF0225 protein YchJ OS=Salmonella paratyphi C (strain RKS4594) GN=ychJ PE=3 SV=1 YCHJ_SALEP - UPF0225 protein YchJ OS=Salmonella enteritidis PT4 (strain P125109) GN=ychJ PE=3 SV=1 YCHJ_SALCH - UPF0225 protein YchJ OS=Salmonella choleraesuis (strain SC-B67) GN=ychJ PE=3 SV=1 YCHJ_SALG2 - UPF0225 protein YchJ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ychJ PE=3 SV=1 YCHJ_SALPK - UPF0225 protein YchJ OS=Salmonella paratyphi A (strain AKU_12601) GN=ychJ PE=3 SV=1 YCHJ_SALPA - UPF0225 protein YchJ OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ychJ PE=3 SV=1 YCHJ_SALCH - UPF0225 protein ychJ OS=Salmonella choleraesuis GN=ychJ PE=3 SV=1 YCHJ_SALPA - UPF0225 protein ychJ OS=Salmonella paratyphi A GN=ychJ PE=3 SV=1 YCHJ_SALCH - UPF0225 protein ychJ OS=Salmonella choleraesuis GN=ychJ PE=3 SV=1	159.0	[0..1]	[152..1]
gi\|410154 - gi\|410154\|gb\|AAC36845.1\| GTG start codon [Escherichia coli]	154.0	[0..1]	[152..1]
YP03_PHOLL, Y250... - (Q7N451) Hypothetical UPF0225 protein plu2503, UPF0225 protein plu2503 OS=Photorhabdus luminescens s... Y2503_PHOLL - UPF0225 protein plu2503 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	151.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLCPCGSA VEYSLCCHPY VSGEKVAPDP EHLMRSRYCA FVMQDADYLI KTWHPSCGAA  60
   61 ALRAELMAGF AHTEWLGLTV FEHCWQDADN IGFVSFVARF TEGGKTGAII ERSRFLKENG 120
  121 QWYYIDGTRP QFGRNDPCPC GSGKKFKKCC GQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	2i9wA
Description:	No description for 2i9wA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.244245144085682	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: