YRC Public Data Repository - Protein Structure Prediction

Protein:	YCDB_ECOLI
Organism:	Escherichia coli
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCDB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75234349, gi\|... - gi\|75234349\|ref\|ZP_00718719.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli E11001... gi\|75190082, gi\|... - gi\|75190082\|ref\|ZP_00703349.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli E24377...	494.0	[0..1]	[423..1]
gi\|192927799, gi... - gi\|75257461\|ref\|ZP_00728964.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli E22], ... gi\|209918274, gi... - gi\|209918274\|ref\|YP_002292358.1\| hypothetical protein ECSE_1083 [Escherichia coli SE11], gi\|20991153... gi\|218351286, gi... - gi\|218694554\|ref\|YP_002402221.1\| heme-binding periplasmic protein involved in iron transport; Tat-de...	491.0	[0..1]	[423..1]
gi\|227884026, gi... - gi\|227884026\|ref\|ZP_04001831.1\| iron (Fe)-dependent peroxidase [Escherichia coli 83972], gi\|22783877... EFEB_ECOL6 - Deferrochelatase/peroxidase EfeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=e... EFEB_ECOUT - Deferrochelatase/peroxidase EfeB OS=Escherichia coli (strain UTI89 / UPEC) GN=efeB PE=3 SV=1 YCDB_ECOL6 - Peroxidase ycdB OS=Escherichia coli O6 GN=ycdB PE=2 SV=1 gi\|226898206, gi... - gi\|237706996\|ref\|ZP_04537477.1\| peroxidase ycdB [Escherichia sp. 3_2_53FAA], gi\|226898206\|gb\|EEH8446...	491.0	[0..1]	[423..1]
gi\|25321166, gi\|... - pir\|\|A85647 hypothetical protein ycdB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|254591677, gi... - gi\|254792277\|ref\|YP_003077114.1\| redox component of a tripartite ferrous iron transporter [Escherich... gi\|15801010, gi\|... - gi\|15801010\|ref\|NP_287026.1\| hypothetical protein Z1521 [Escherichia coli O157:H7 EDL933], gi\|125143... EFEB_ECO57 - Deferrochelatase/peroxidase EfeB OS=Escherichia coli O157:H7 GN=efeB PE=1 SV=1 gi\|208738200, gi... - gi\|208822715\|ref\|ZP_03263034.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209398983, gi... - gi\|209398983\|ref\|YP_002269745.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|217318494, gi... - gi\|217328067\|ref\|ZP_03444149.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|189378225, gi... - gi\|189378225\|gb\|EDU96641.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC508], gi\|168799... gi\|195935277 - gi\|195935277\|ref\|ZP_03080659.1\| hypothetical protein EscherichcoliO157_02282 [Escherichia coli O157:... gi\|208807305, gi... - gi\|208807305\|ref\|ZP_03249642.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|208732059, gi... - gi\|208815411\|ref\|ZP_03256590.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|189363039, gi... - gi\|189363039\|gb\|EDU81458.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|187770385, gi... - gi\|187770385\|gb\|EDU34229.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|168781042, gi... - gi\|189001189\|gb\|EDU70175.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|15830519, gi\|... - gi\|15830519\|ref\|NP_309292.1\| hypothetical protein ECs1265 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372756, gi... - gi\|189372756\|gb\|EDU91172.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC869], gi\|168787... gi\|168747358, gi... - gi\|188018087\|gb\|EDU56209.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4113], gi\|16874... gi\|168754346, gi... - gi\|189358328\|gb\|EDU76747.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|189368695, gi... - gi\|189368695\|gb\|EDU87111.1\| Tat-translocated enzyme [Escherichia coli O157:H7 str. EC4501], gi\|16876...	490.0	[0..1]	[423..1]
gi\|191166929, gi... - gi\|75229939\|ref\|ZP_00716456.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli B7A], ...	490.0	[0..1]	[423..1]
EFEB_SHISS - Deferrochelatase/peroxidase EfeB OS=Shigella sonnei (strain Ss046) GN=efeB PE=3 SV=1	490.0	[0..1]	[423..1]
gi\|218426547, gi... - gi\|218688983\|ref\|YP_002397195.1\| heme-binding periplasmic protein involved in iron transport; Tat-de... gi\|190907289, gi... - gi\|75240625\|ref\|ZP_00724542.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli F11], ... EFEB_ECOL5 - Deferrochelatase/peroxidase EfeB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=efeB PE=3 SV=...	490.0	[0..1]	[423..1]
gi\|83586438, gi\|... - gi\|83586438\|ref\|ZP_00925072.1\| COG2837: Predicted iron-dependent peroxidase [Escherichia coli 101-1]...	489.0	[0..1]	[423..1]
EFEB_SHIBS - Deferrochelatase/peroxidase EfeB OS=Shigella boydii serotype 4 (strain Sb227) GN=efeB PE=3 SV=1	489.0	[0..1]	[423..1]
gi\|218364677, gi... - gi\|218557908\|ref\|YP_002390821.1\| heme-binding periplasmic protein involved in iron transport; Tat-de... EFEB_ECOK1 - Deferrochelatase/peroxidase EfeB OS=Escherichia coli O1:K1 / APEC GN=efeB PE=3 SV=1	487.0	[0..1]	[423..1]

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Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKDENGVN EPSRRRLLKV IGALALAGSC PVAHAQKTQS APGTLSPDAR NEKQPFYGEH  60
   61 QAGILTPQQA AMMLVAFDVL ASDKADLERL FRLLTQRFAF LTQGGAAPET PNPRLPPLDS 120
  121 GILGGYIAPD NLTITLSVGH SLFDERFGLA PQMPKKLQKM TRFPNDSLDA ALCHGDVLLQ 180
  181 ICANTQDTVI HALRDIIKHT PDLLSVRWKR EGFISDHAAR SKGKETPINL LGFKDGTANP 240
  241 DSQNDKLMQK VVWVTADQQE PAWTIGGSYQ AVRLIQFRVE FWDRTPLKEQ QTIFGRDKQT 300
  301 GAPLGMQHEH DVPDYASDPE GKVIALDSHI RLANPRTAES ESSLMLRRGY SYSLGVTNSG 360
  361 QLDMGLLFVC YQHDLEKGFL TVQKRLNGEA LEEYVKPIGG GYFFALPGVK DANDYFGSAL 420
  421 LRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.522879
Match:	2hagA
Description:	No description for 2hagA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.035297568348327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: