YRC Public Data Repository - Protein Structure Prediction

Protein:	YCBR_ECOLI
Organism:	Escherichia coli
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157155029, gi... - gi\|157155029\|ref\|YP_001462172.1\| periplasmic pilus chaperone family protein [Escherichia coli E24377... gi\|218351146, gi... - gi\|218694414\|ref\|YP_002402081.1\| putative periplasmic pilin chaperone [Escherichia coli 55989], gi\|2... gi\|218553526, gi... - gi\|218553526\|ref\|YP_002386439.1\| putative periplasmic pilin chaperone [Escherichia coli IAI1], gi\|21... gi\|74311497, gi\|... - gi\|74311497\|ref\|YP_309916.1\| putative chaperone [Shigella sonnei Ss046], gi\|73854974\|gb\|AAZ87681.1\| ...	234.0	[0..1]	[233..1]
gi\|254792139, gi... - gi\|254792139\|ref\|YP_003076976.1\| predicted periplasmic pilin chaperone [Escherichia coli O157:H7 str... gi\|195939646 - gi\|195939646\|ref\|ZP_03085028.1\| putative chaperone [Escherichia coli O157:H7 str. EC4024] gi\|25299289, gi\|... - pir\|\|D85620 probable chaperone ycbR [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|15800800, gi\|... - gi\|15800800\|ref\|NP_286814.1\| putative chaperone [Escherichia coli O157:H7 EDL933], gi\|12514117\|gb\|AA... gi\|15830276, gi\|... - gi\|15830276\|ref\|NP_309049.1\| putative chaperone [Escherichia coli O157:H7 str. Sakai], gi\|13360481\|d... ELFD_ECO57 - Probable fimbrial chaperone protein ElfD OS=Escherichia coli O157:H7 GN=elfD PE=2 SV=1	234.0	[0..1]	[233..1]
gi\|110804955, gi... - gi\|110804955\|ref\|YP_688475.1\| putative chaperone [Shigella flexneri 5 str. 8401], gi\|110614503\|gb\|AB...	233.0	[0..1]	[233..1]
gi\|75512095 - gi\|75512095\|ref\|ZP_00734680.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli 5... gi\|83585882, gi\|... - gi\|83585882\|ref\|ZP_00924522.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli 1... tr\|A0A0X8U815\|A0... - Fimbrial protein OS=Escherichia coli (strain K12) GN=C3026_05760 PE=4 SV=1	227.0	[0..10]	[233..1]
gi\|193064656, gi... - gi\|75257344\|ref\|ZP_00728860.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75214721, gi\|... - gi\|75214721\|ref\|ZP_00713226.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75190008 - gi\|75190008\|ref\|ZP_00703275.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|194434373, gi... - gi\|83569166\|ref\|ZP_00920625.1\| COG3121: P pilus assembly protein, chaperone PapD [Shigella dysenteri...	227.0	[0..10]	[233..1]
gi\|75229855, gi\|... - gi\|75229855\|ref\|ZP_00716378.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B...	226.0	[0..10]	[233..1]
gi\|75195129 - gi\|75195129\|ref\|ZP_00705199.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli H...	225.0	[0..10]	[233..1]
gi\|26247115, gi\|... - gi\|26247115\|ref\|NP_753155.1\| F1C periplasmic chaperone [Escherichia coli CFT073], gi\|26107515\|gb\|AAN... gi\|158147690, gi... - gi\|83356324\|gb\|ABC16647.1\| FocC [Escherichia coli], gi\|47600591\|emb\|CAE55712.1\| FocC protein [Escher... gi\|47600591 - gi\|47600591\|emb\|CAE55712.1\| FocC protein [Escherichia coli Nissle 1917] gi\|227834963, gi... - gi\|227888117\|ref\|ZP_04005922.1\| F1C periplasmic chaperone [Escherichia coli 83972], gi\|227834963\|gb\|...	224.0	[0..5]	[230..1]
gi\|238799305, gi... - gi\|77960106\|ref\|ZP_00823998.1\| COG3121: P pilus assembly protein, chaperone PapD [Yersinia mollareti...	223.0	[0..4]	[232..1]
gi\|14594876 - gi\|14594876\|emb\|CAC16952.2\| SfaE protein [Escherichia coli] gi\|75241891, gi\|... - gi\|75241891\|ref\|ZP_00725710.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli F... gi\|110640501, gi... - gi\|110640501\|ref\|YP_668229.1\| F1C periplasmic chaperone [Escherichia coli 536], gi\|110342093\|gb\|ABG6...	223.0	[0..5]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCITKGIV TVSLTAILLS CSSAWAAGKG GIGLAATRLV YSEGEEQISL GVRNTSPDVP  60
   61 YLIQSWVMTP DNKKSADFII TPPLFVLNPA NENLLRIMYI GAPLAKDRET LFFTSVRAVP 120
  121 STTKRKEGNT LKIATQSVIK LFWRPKGLAY PLGEAPAKLR CTSSADMVTV SNPTPYFITL 180
  181 TDLKIGGKVV KNQMISPFDK YQFSLPKGAK NSSVTYRTIN DYGAETPQLN CKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	1l4iA
Description:	Periplasmic chaperone SfaE; SfaE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.40357083304367	bayes_pls_golite062009
protein binding	1.19650199611166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: