YRC Public Data Repository - Protein Structure Prediction

Protein:	YCBJ_ECOLI
Organism:	Escherichia coli
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25324059 - pir\|\|AF2446 hypothetical protein alr5126 [imported] - Nostoc sp. (strain PCC 7120) gi\|17134264, gi\|... - gi\|17232618\|ref\|NP_489166.1\| hypothetical protein alr5126 [Nostoc sp. PCC 7120], gi\|17134264\|dbj\|BAB...	193.0	[0..3]	[294..4]
gi\|75702282, gi\|... - gi\|75908557\|ref\|YP_322853.1\| aminoglycoside phosphotransferase [Anabaena variabilis ATCC 29413], gi\|...	189.0	[0..3]	[294..4]
gi\|82703446, gi\|... - gi\|82703446\|ref\|YP_413012.1\| fructosamine kinase [Nitrosospira multiformis ATCC 25196], gi\|82411511\|...	188.0	[0..3]	[296..6]
KT3K_MOUSE - Ketosamine-3-kinase OS=Mus musculus GN=Fn3krp PE=2 SV=1	188.0	[0..4]	[294..1]
gi\|78364682, gi\|... - gi\|78486396\|ref\|YP_392321.1\| fructosamine kinase [Thiomicrospira crunogena XCL-2], gi\|78364682\|gb\|AB...	187.0	[0..2]	[293..4]
gi\|67923270, gi\|... - gi\|67923270\|ref\|ZP_00516755.1\| Aminoglycoside phosphotransferase:Fructosamine kinase [Crocosphaera w... gi\|119713446 - gi\|119713446\|gb\|ABL97507.1\| aminoglycoside phosphotransferase: fructosamine kinase [uncultured marin...	187.0	[0..3]	[294..4]
gi\|50757673 - gi\|50757673\|ref\|XP_415602.1\| PREDICTED: similar to Hypothetical protein 9030012M21 [Gallus gallus]	186.0	[0..4]	[294..12]
gi\|153840346, gi... - gi\|153840346\|ref\|ZP_01993013.1\| phosphatidylserine decarboxylase [Vibrio parahaemolyticus AQ3810], g... Y1481_VIBPA - Uncharacterized protein VP1481 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP... YE81_VIBPA, Y148... - (Q87PM1) Hypothetical protein VP1481, Uncharacterized protein VP1481 OS=Vibrio parahaemolyticus GN=V...	186.0	[0..2]	[295..3]
gi\|53686826 - gi\|53686826\|ref\|ZP_00345040.1\| COG3001: Fructosamine-3-kinase [Nostoc punctiforme PCC 73102]	186.0	[0..3]	[294..4]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLRAELSH LLGEKLSRIE CVNEKADTAL WALYDSQGNP MPLMARSFST PGKARQLAWK  60
   61 TTMLARSGTV RMPTIYGVMT HEEHPGPDVL LLERMRGVSV EAPARTPERW EQLKDQIVEA 120
  121 LLAWHRQDSR GCVGAVDNTQ ENFWPSWYRQ HVEVLWTTLN QFNNTGLTMQ DKRILFRTRE 180
  181 CLPALFEGFN DNCVLIHGNF CLRSMLKDSR SDQLLAMVGP GLMLWAPREY ELFRLMDNSL 240
  241 AEDLLWSYLQ RAPVAESFIW RRWLYVLWDE VAQLVNTGRF SRRNFDLASK SLLPWLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	2ppqA
Description:	No description for 2ppqA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.686492203566958	bayes_pls_golite062009
transferase activity	0.66841261245817	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.66326000691279	bayes_pls_golite062009
kinase activity	0.65753777854807	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.64444215862273	bayes_pls_golite062009
protein kinase activity	0.56587465829201	bayes_pls_golite062009
binding	0.0554152720226	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: