YRC Public Data Repository - Protein Structure Prediction

Protein:	AMID_ECOLI, YBJR...
Organism:	Escherichia coli
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMID_ECOLI, YBJR....

Description	E-value	Query Range	Subject Range
gi\|81241760, gi\|... - gi\|82777612\|ref\|YP_403961.1\| putative regulator [Shigella dysenteriae Sd197], gi\|81241760\|gb\|ABB6247...	269.0	[0..1]	[276..1]
gi\|189373178, gi... - gi\|189373178\|gb\|EDU91594.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|189377738, gi... - gi\|189377738\|gb\|EDU96154.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|195936918 - gi\|195936918\|ref\|ZP_03082300.1\| putative regulator [Escherichia coli O157:H7 str. EC4024] gi\|208728577, gi... - gi\|208808776\|ref\|ZP_03251113.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 st... gi\|15830207, gi\|... - gi\|15830207\|ref\|NP_308980.1\| putative regulator [Escherichia coli O157:H7 str. Sakai], gi\|13360412\|d... gi\|189366534, gi... - gi\|189366534\|gb\|EDU84950.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|189363519, gi... - gi\|189363519\|gb\|EDU81938.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|15830207, gi\|... - gi\|15830207\|ref\|NP_308980.1\| putative regulator [Escherichia coli O157:H7], gi\|13360412\|dbj\|BAB34376... gi\|187768253, gi... - gi\|187768253\|gb\|EDU32097.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|25498508, gi\|... - pir\|\|E85598 probable regulator Z1100 [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|189002820, gi... - gi\|189002820\|gb\|EDU71806.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|254591468, gi... - gi\|254792068\|ref\|YP_003076905.1\| predicted amidase and lipoprotein [Escherichia coli O157:H7 str. TW... gi\|12513894, gi\|... - gi\|15800625\|ref\|NP_286639.1\| putative regulator [Escherichia coli O157:H7 EDL933], gi\|12513894\|gb\|AA... gi\|168750059, gi... - gi\|188015749\|gb\|EDU53871.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|168756669, gi... - gi\|189356258\|gb\|EDU74677.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 str. E... gi\|208815481, gi... - gi\|208815481\|ref\|ZP_03256660.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 st... gi\|208738026, gi... - gi\|208822541\|ref\|ZP_03262860.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 st... gi\|209157534, gi... - gi\|209396134\|ref\|YP_002269541.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 s... gi\|217325013, gi... - gi\|217325013\|ref\|ZP_03441097.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7 st...	269.0	[0..1]	[276..1]
gi\|36786112, gi\|... - gi\|37526680\|ref\|NP_930024.1\| hypothetical protein plu2790 [Photorhabdus luminescens subsp. laumondii...	268.0	[0..1]	[274..1]
gi\|238717974, gi... - gi\|77961607\|ref\|ZP_00825441.1\| COG3023: Negative regulator of beta-lactamase expression [Yersinia mo...	263.0	[0..10]	[274..3]
gi\|237812097, gi... - gi\|237812097\|ref\|YP_002896548.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia pseudomallei ... gi\|134282269, gi... - gi\|134282269\|ref\|ZP_01768974.1\| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 305], ... gi\|167911107 - gi\|167911107\|ref\|ZP_02498198.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu... gi\|184210476, gi... - gi\|99908486\|ref\|ZP_01316178.1\| hypothetical protein Bpse1_03004497 [Burkholderia pseudomallei 1655],...	258.0	[0..6]	[275..8]
gi\|126219425, gi... - gi\|67737742\|ref\|ZP_00488474.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi...	258.0	[0..6]	[275..8]
gi\|147749470, gi... - gi\|83618607\|ref\|ZP_00929063.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|83625985, gi\|... - gi\|83625985\|ref\|ZP_00936212.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|53723478, gi\|... - gi\|53723478\|ref\|YP_102932.1\| N-acetylmuramoyl-L-alanine amidase domain-containing protein [Burkholde... gi\|100915988, gi... - gi\|67636572\|ref\|ZP_00435517.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|67640278, gi\|... - gi\|67640278\|ref\|ZP_00439091.1\| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia mallei GB8 hors... gi\|84522675 - gi\|84522675\|ref\|ZP_01009811.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|254178543, gi... - gi\|254178543\|ref\|ZP_04885198.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia mall... gi\|167002549 - gi\|167002549\|ref\|ZP_02268339.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia mall...	258.0	[0..6]	[275..8]
gi\|167902865 - gi\|167902865\|ref\|ZP_02490070.1\| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei NCTC 1... gi\|167845893 - gi\|167845893\|ref\|ZP_02471401.1\| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei B7210] gi\|161356494, gi... - gi\|82534332\|ref\|ZP_00893372.1\| hypothetical protein Bpse110_02004405 [Burkholderia pseudomallei 1106... gi\|126228897, gi... - gi\|82529044\|ref\|ZP_00888300.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi...	258.0	[0..6]	[275..8]
gi\|157807630, gi... - gi\|83677755\|ref\|ZP_00939496.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|67647658, gi\|... - gi\|67647658\|ref\|ZP_00445898.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|254261130, gi... - gi\|90291325\|ref\|ZP_01210954.1\| hypothetical protein Bpse17_02003981 [Burkholderia pseudomallei 1710a... gi\|124384334, gi... - gi\|124384334\|ref\|YP_001026154.1\| N-acetylmuramoyl-L-alanine amidase domain-containing protein [Burkh... gi\|52209899, gi\|... - gi\|53719485\|ref\|YP_108471.1\| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei ... gi\|167894462 - gi\|167894462\|ref\|ZP_02481864.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu... gi\|167919126 - gi\|167919126\|ref\|ZP_02506217.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu... gi\|157936337, gi... - gi\|67753865\|ref\|ZP_00492787.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|169654515, gi... - gi\|67759421\|ref\|ZP_00498158.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|85064687 - gi\|85064687\|ref\|ZP_01025540.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|148027504, gi... - gi\|87315429\|ref\|ZP_01096457.1\| COG3023: Negative regulator of beta-lactamase expression [Burkholderi... gi\|167815977 - gi\|167815977\|ref\|ZP_02447657.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu... gi\|226196393, gi... - gi\|226196393\|ref\|ZP_03791975.1\| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei Pakist... gi\|167824351 - gi\|167824351\|ref\|ZP_02455822.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu... gi\|167738753 - gi\|167738753\|ref\|ZP_02411527.1\| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu...	258.0	[0..6]	[275..8]
gi\|78066160, gi\|... - gi\|78066160\|ref\|YP_368929.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Bu...	258.0	[0..7]	[275..9]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL  60
   61 ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL 120
  121 ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL 180
  181 FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR 240
  241 VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	2bgxA
Description:	No description for 2bgxA was found.

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.29207604418857	bayes_pls_golite062009
peptidoglycan binding	5.10635543502728	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.20235326428146	bayes_pls_golite062009
N-acetyl-anhydromuramoyl-L-alanine amidase activity	1.8723848738588	bayes_pls_golite062009
pattern binding	1.3169647365105	bayes_pls_golite062009
hydrolase activity	1.08510134637257	bayes_pls_golite062009
catalytic activity	0.628556091191359	bayes_pls_golite062009
receptor activity	0.165305685738616	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: