YRC Public Data Repository - Protein Structure Prediction

Protein:	YBHB_ECOLI
Organism:	Escherichia coli
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBHB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|12620102 - gi\|12620102\|gb\|AAG60561.1\|AF250769_2 unknown [uncultured bacterium pCosHE1]	203.0	[0..1]	[158..1]
gi\|12407612 - gi\|12407612\|gb\|AAG53587.1\|AF248314_2 unknown [uncultured bacterium pCosAS1]	198.0	[0..1]	[158..1]
gi\|82776157, gi\|... - gi\|82776157\|ref\|YP_402504.1\| putative kinase inhibitor protein [Shigella dysenteriae Sd197], gi\|8124...	198.0	[0..1]	[158..1]
gi\|25302206, gi\|... - pir\|\|D85585 hypothetical protein ybhB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188015483, gi... - gi\|188015483\|gb\|EDU53605.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|13360310, gi\|... - gi\|15830105\|ref\|NP_308878.1\| hypothetical protein ECs0851 [Escherichia coli O157:H7], gi\|13360310\|db... gi\|30062258, gi\|... - gi\|30062258\|ref\|NP_836429.1\| putative kinase inhibitor protein [Shigella flexneri 2a str. 2457T], gi... gi\|15800524, gi\|... - gi\|15800524\|ref\|NP_286536.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 EDL933], gi... gi\|56383274, gi\|... - gi\|56479723\|ref\|NP_706651.2\| putative kinase inhibitor protein [Shigella flexneri 2a str. 301], gi\|5... gi\|110614322, gi... - gi\|110804774\|ref\|YP_688294.1\| putative kinase inhibitor protein [Shigella flexneri 5 str. 8401], gi\|... gi\|208738263, gi... - gi\|208822778\|ref\|ZP_03263097.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|208815998, gi... - gi\|208815998\|ref\|ZP_03257177.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|208809096, gi... - gi\|208809096\|ref\|ZP_03251433.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|195936811 - gi\|195936811\|ref\|ZP_03082193.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 str. EC4... gi\|218357205, gi... - gi\|218549664\|ref\|YP_002383455.1\| putative kinase inhibitor protein [Escherichia fergusonii ATCC 3546... gi\|217324297, gi... - gi\|217324297\|ref\|ZP_03440381.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|13360310, gi\|... - gi\|15830105\|ref\|NP_308878.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 str. Sakai]... gi\|209158670, gi... - gi\|209397270\|ref\|YP_002269442.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 ... gi\|168776429, gi... - gi\|187768158\|gb\|EDU32002.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|168767271, gi... - gi\|189363383\|gb\|EDU81802.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|168763415, gi... - gi\|189366477\|gb\|EDU84893.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|189355849, gi... - gi\|189355849\|gb\|EDU74268.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|194416777, gi... - gi\|194434995\|ref\|ZP_03067237.1\| phosphatidylethanolamine-binding protein [Shigella dysenteriae 1012]... gi\|189376936, gi... - gi\|189376936\|gb\|EDU95352.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|254591367, gi... - gi\|254791967\|ref\|YP_003076804.1\| predicted kinase inhibitor [Escherichia coli O157:H7 str. TW14359],... gi\|168786984, gi... - gi\|189373000\|gb\|EDU91416.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|189003113, gi... - gi\|189003113\|gb\|EDU72099.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ...	196.0	[0..1]	[158..1]
gi\|260843015\|ref... - putative kinase inhibitor [Escherichia coli O103:H2 str. 12009] gi\|75255324, gi\|... - gi\|75255324\|ref\|ZP_00727153.1\| COG1881: Phospholipid-binding protein [Escherichia coli E22], gi\|1930... gi\|75208773, gi\|... - gi\|75208773\|ref\|ZP_00709062.1\| COG1881: Phospholipid-binding protein [Escherichia coli B171], gi\|194... gi\|164457635 - gi\|164457635\|dbj\|BAF96542.1\| predicted kinase inhibitor [Escherichia coli O103:H2] gi\|195182793 - gi\|195182793\|dbj\|BAG66373.1\| predicted protein [Escherichia coli O111:H-] gi\|33323008 - gi\|33323008\|gb\|AAQ07242.1\|AF497476_3 YbhB [Escherichia coli]	196.0	[0..1]	[158..1]
gi\|455168 - gi\|455168\|gb\|AAA23513.1\| ORF 1 [Escherichia coli]	195.0	[0..1]	[158..1]
gi\|85721638, gi\|... - gi\|85858547\|ref\|YP_460749.1\| phosphatidylethanolamine-binding protein [Syntrophus aciditrophicus SB]...	195.0	[0..1]	[157..34]
gi\|12620125 - gi\|12620125\|gb\|AAG60577.1\|AF250776_1 hypothetical 17.1 kDa protein in modC-bioA intergenic region [u...	195.0	[0..1]	[158..1]
gi\|91071376, gi\|... - gi\|91209802\|ref\|YP_539788.1\| putative kinase inhibitor protein [Escherichia coli UTI89], gi\|91071376... gi\|218364447, gi... - gi\|218557678\|ref\|YP_002390591.1\| putative kinase inhibitor protein [Escherichia coli S88], gi\|218364... gi\|218688558, gi... - gi\|218688558\|ref\|YP_002396770.1\| putative kinase inhibitor protein [Escherichia coli ED1a], gi\|21842... gi\|170680241, gi... - gi\|170680241\|ref\|YP_001742876.1\| phosphatidylethanolamine-binding protein [Escherichia coli SMS-3-5]... gi\|117622956, gi... - gi\|117622956\|ref\|YP_851869.1\| putative kinase inhibitor protein [Escherichia coli APEC O1], gi\|11551... gi\|237707270, gi... - gi\|237707270\|ref\|ZP_04537751.1\| ybhB [Escherichia sp. 3_2_53FAA], gi\|226898480\|gb\|EEH84739.1\| ybhB [... gi\|26246740, gi\|... - gi\|26246740\|ref\|NP_752780.1\| putative kinase inhibitor protein [Escherichia coli CFT073], gi\|2610713... gi\|227839018, gi... - gi\|227884266\|ref\|ZP_04002071.1\| kinase inhibitor protein [Escherichia coli 83972], gi\|227839018\|gb\|E...	195.0	[0..1]	[158..1]
gi\|77979893, gi\|... - gi\|77979893\|ref\|ZP_00835309.1\| COG1881: Phospholipid-binding protein [Yersinia intermedia ATCC 29909...	194.0	[0..3]	[158..24]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLISNDLRD GDKLPHRHVF NGMGYDGDNI SPHLAWDDVP AGTKSFVVTC YDPDAPTGSG  60
   61 WWHWVVVNLP ADTRVLPQGF GSGLVAMPDG VLQTRTDFGK TGYDGAAPPK GETHRYIFTV 120
  121 HALDIERIDV DEGASGAMVG FNVHFHSLAS ASITAMFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1fjjA
Description:	Hypothetical protein YbhB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0348943211245614	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: