YRC Public Data Repository - Protein Structure Prediction

Protein:	YBGF_ECOLI
Organism:	Escherichia coli
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBGF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	196.0	[0..9]	[258..1027]
gi\|72002781, gi\|... - gi\|72382931\|ref\|YP_292286.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	192.0	[0..22]	[263..126]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	186.0	[0..45]	[260..43]
gi\|46119331, gi\|... - gi\|67923599\|ref\|ZP_00517071.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854569\|gb...	184.0	[0..15]	[262..196]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	184.0	[0..24]	[263..102]
gi\|40063716 - gi\|40063716\|gb\|AAR38497.1\| TPR repeat protein [uncultured marine bacterium 583]	183.0	[0..15]	[263..14]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	182.0	[0..24]	[263..101]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNFRHQLL SLSLLVGIAA PWAAFAQAPI SSVGSGSVED RVTQLERISN AHSQLLTQLQ  60
   61 QQLSDNQSDI DSLRGQIQEN QYQLNQVVER QKQILLQIDS LSSGGAAAQS TSGDQSGAAA 120
  121 STTPTADAGT ANAGAPVKSG NANTDYNAAI ALVQDKSRQD DAMVAFQNFI KNYPDSTYLP 180
  181 NANYWLGQLN YNKGKKDDAA YYFASVVKNY PKSPKAADAM FKVGVIMQDK GDTAKAKAVY 240
  241 QQVISKYPGT DGAKQAQKRL NAM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.439878494078852	bayes_pls_golite062009
protein binding	0.164436493568669	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: