YRC Public Data Repository - Protein Structure Prediction

Protein:	YBDG_ECOLI
Organism:	Escherichia coli
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBDG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13360073, gi\|... - gi\|15829869\|ref\|NP_308642.1\| putative transport [Escherichia coli O157:H7], gi\|13360073\|dbj\|BAB34038... gi\|25389859, gi\|... - pir\|\|B85556 probable transport ybdG [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|12513462, gi\|... - gi\|15800290\|ref\|NP_286302.1\| putative transport [Escherichia coli O157:H7 EDL933], gi\|12513462\|gb\|AA... gi\|209160366, gi... - gi\|209398966\|ref\|YP_002269208.1\| transporter, small conductance mechanosensitive ion channel (MscS) ... gi\|217321933, gi... - gi\|217325712\|ref\|ZP_03441796.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|13360073, gi\|... - gi\|15829869\|ref\|NP_308642.1\| putative transport [Escherichia coli O157:H7 str. Sakai], gi\|13360073\|d... gi\|195936122 - gi\|195936122\|ref\|ZP_03081504.1\| putative transport [Escherichia coli O157:H7 str. EC4024] gi\|208807206, gi... - gi\|208807206\|ref\|ZP_03249543.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|208814809, gi... - gi\|208814809\|ref\|ZP_03255988.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|208823002, gi... - gi\|208823002\|ref\|ZP_03263320.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|168770172, gi... - gi\|189360898\|gb\|EDU79317.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|168774631, gi... - gi\|187769715\|gb\|EDU33559.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189373697, gi... - gi\|189373697\|gb\|EDU92113.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189379255, gi... - gi\|189379255\|gb\|EDU97671.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|168754669, gi... - gi\|189358075\|gb\|EDU76494.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189369034, gi... - gi\|189369034\|gb\|EDU87450.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|254791742, gi... - gi\|254791742\|ref\|YP_003076579.1\| predicted mechanosensitive channel [Escherichia coli O157:H7 str. T...	296.0	[0..1]	[415..1]
gi\|83586989, gi\|... - gi\|83586989\|ref\|ZP_00925619.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|253976748, gi... - gi\|254287441\|ref\|YP_003053189.1\| predicted mechanosensitive channel [Escherichia coli BL21(DE3)], gi... gi\|253972554, gi... - gi\|254160653\|ref\|YP_003043761.1\| predicted mechanosensitive channel [Escherichia coli B str. REL606]...	296.0	[0..1]	[415..1]
gi\|82775839, gi\|... - gi\|82775839\|ref\|YP_402186.1\| putative transport [Shigella dysenteriae Sd197], gi\|81239987\|gb\|ABB6069...	296.0	[0..1]	[415..1]
gi\|115511924, gi... - gi\|117622800\|ref\|YP_851713.1\| hypothetical protein APECO1_1471 [Escherichia coli APEC O1], gi\|115511... gi\|218557517, gi... - gi\|218557517\|ref\|YP_002390430.1\| putative membrane protein; putative channel [Escherichia coli S88],... gi\|110640807, gi... - gi\|110640807\|ref\|YP_668535.1\| transporter [Escherichia coli 536], gi\|110342399\|gb\|ABG68636.1\| putati... gi\|26106954, gi\|... - gi\|26246555\|ref\|NP_752594.1\| hypothetical protein c0663 [Escherichia coli CFT073], gi\|26106954\|gb\|AA... gi\|91071196, gi\|... - gi\|91209622\|ref\|YP_539608.1\| hypothetical protein UTI89_C0577 [Escherichia coli UTI89], gi\|91071196\|... gi\|227838531, gi... - gi\|227884445\|ref\|ZP_04002250.1\| small conductance mechanosensitive ion channel (MscS) family protein... gi\|237707453, gi... - gi\|237707453\|ref\|ZP_04537934.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|190907408, gi... - gi\|75240734\|ref\|ZP_00724641.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli...	296.0	[0..1]	[415..1]
gi\|75258688, gi\|... - gi\|75258688\|ref\|ZP_00730095.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|190900639, gi... - gi\|75227372\|ref\|ZP_00714150.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|75210796, gi\|... - gi\|75210796\|ref\|ZP_00710928.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|75189615, gi\|... - gi\|75189615\|ref\|ZP_00702882.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|209911091, gi... - gi\|209917832\|ref\|YP_002291916.1\| putative transport protein [Escherichia coli SE11], gi\|209911091\|db... gi\|218359886, gi... - gi\|218553118\|ref\|YP_002386031.1\| putative membrane protein; putative channel [Escherichia coli IAI1]... gi\|218694017, gi... - gi\|218694017\|ref\|YP_002401684.1\| putative membrane protein; putative channel [Escherichia coli 55989...	295.0	[0..1]	[415..1]
gi\|75236558, gi\|... - gi\|75236558\|ref\|ZP_00720646.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli...	294.0	[0..1]	[415..1]
gi\|81244434, gi\|... - gi\|82543023\|ref\|YP_406970.1\| putative transport [Shigella boydii Sb227], gi\|81244434\|gb\|ABB65142.1\| ...	294.0	[0..1]	[415..1]
gi\|187733207, gi... - gi\|75177524\|ref\|ZP_00697605.1\| COG0668: Small-conductance mechanosensitive channel [Shigella boydii ...	292.0	[0..1]	[415..1]
gi\|56128544, gi\|... - gi\|56414287\|ref\|YP_151362.1\| hypothetical protein SPA2158 [Salmonella enterica subsp. enterica serov... gi\|213646268 - gi\|213646268\|ref\|ZP_03376321.1\| hypothetical protein SentesTy_02315 [Salmonella enterica subsp. ente... gi\|213855169 - gi\|213855169\|ref\|ZP_03383409.1\| hypothetical protein SentesT_14257 [Salmonella enterica subsp. enter... gi\|213999522 - gi\|213999522\|ref\|ZP_03410257.1\| hypothetical protein Salmonellentericaenterica_01824 [Salmonella ent... gi\|29138322, gi\|... - gi\|29142691\|ref\|NP_806033.1\| hypothetical protein t2292 [Salmonella enterica subsp. enterica serovar... gi\|204320426, gi... - gi\|204930492\|ref\|ZP_03221422.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|16759536 - gi\|16759536\|ref\|NP_455153.1\| hypothetical protein STY0618 [Salmonella enterica subsp. enterica serov... gi\|205271646, gi... - gi\|205351865\|ref\|YP_002225666.1\| hypothetical protein SG0579 [Salmonella enterica subsp. enterica se... gi\|206707845, gi... - gi\|207856042\|ref\|YP_002242693.1\| hypothetical protein SEN0545 [Salmonella enterica subsp. enterica s... gi\|25511772, gi\|... - gi\|25511772\|pir\|\|AB0573 probable membrane protein STY0618 [imported] - Salmonella enterica subsp. en... gi\|213427911 - gi\|213427911\|ref\|ZP_03360661.1\| hypothetical protein SentesTyphi_21365 [Salmonella enterica subsp. e... gi\|161364586, gi... - gi\|161615222\|ref\|YP_001589187.1\| hypothetical protein SPAB_02990 [Salmonella enterica subsp. enteric... gi\|205350023, gi... - gi\|205350023\|gb\|EDZ36654.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|197363209, gi... - gi\|197363209\|ref\|YP_002142846.1\| hypothetical protein SSPA2007 [Salmonella enterica subsp. enterica ... gi\|198241993, gi... - gi\|198241993\|ref\|YP_002214570.1\| transporter, small conductance mechanosensitive ion channel [Salmon...	291.0	[0..1]	[415..1]
gi\|205331004, gi... - gi\|205331004\|gb\|EDZ17768.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|16763946, gi\|... - gi\|16763946\|ref\|NP_459561.1\| hypothetical protein STM0569 [Salmonella typhimurium LT2], gi\|16419078\|... gi\|194456287, gi... - gi\|194469923\|ref\|ZP_03075907.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|197261686, gi... - gi\|197261686\|ref\|ZP_03161760.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|168818816, gi... - gi\|205344186\|gb\|EDZ30950.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|194410148, gi... - gi\|194451844\|ref\|YP_002044600.1\| transporter, small conductance mechanosensitive ion channel [Salmon... lcl\|NC_016856.1_... - [gene=ybdG] [protein=hypothetical protein] [protein_id=YP_005236272.1] [location=complement(626329..... gi\|168231569, gi... - gi\|205334081\|gb\|EDZ20845.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|168240405, gi... - gi\|205340174\|gb\|EDZ26938.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ...	291.0	[0..1]	[415..1]

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Predicted Domain #1

Region A:
Residues: [1-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLISQVED LAGIEIDHTT SMVMIFGIIF LTAVVVHIIL HWVVLRTFEK RAIASSRLWL  60
   61 QIITQNKLFH RLAFTLQGII VNIQAVFWLQ KGTEAADILT TCAQLWIMMY ALLSVFSLLD 120
  121 VILNLAQKFP AASQLPLKGI FQGIKLIGAI LVGILMISLL IGQSPAILIS GLGAMAAVLM 180
  181 LVFKDPILGL VAGIQLSAND MLKLGDWLEM PKYGADGAVI DIGLTTVKVR NWDNTITTIP 240
  241 TWSLVSDSFK NWSGMSASGG RRIKRSISID VTSIRFLDED EMQRLNKAHL LKPYLTSRHQ 300
  301 EINEWNRQQG STESVLNLRR MTNIGTFRAY LNEYLRNHPR IRKDMTLMVR QLAPGDNGLP 360
  361 LEIYAFTNTV VWLEYESIQA DIFDHIFAIV EEFGLRLHQS PTGNDIRSLA GAFKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2oauA
Description:	No description for 2oauA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.35978536608048	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: