YRC Public Data Repository - Protein Structure Prediction

Protein:	YBCO_ECOLI
Organism:	Escherichia coli
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBCO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24371572, gi\|... - gi\|24371572\|ref\|NP_720314.1\| Orf-136 [Enterobacteria phage ST64T], gi\|24250799\|gb\|AAL15512.1\| Orf-13...	164.0	[0..1]	[96..41]
gi\|56414520, gi\|... - gi\|56414520\|ref\|YP_151595.1\| hypothetical protein SPA2402 [Salmonella enterica subsp. enterica serov... gi\|197363451, gi... - gi\|197363451\|ref\|YP_002143088.1\| hypothetical protein SSPA2241 [Salmonella enterica subsp. enterica ...	154.0	[0..1]	[96..1]
gi\|157159753, gi... - gi\|75194477\|ref\|ZP_00704547.1\| hypothetical protein EcolH_01000255 [Escherichia coli HS], gi\|1571597... gi\|215264212, gi... - gi\|215486140\|ref\|YP_002328571.1\| hypothetical protein E2348C_1008 [Escherichia coli O127:H6 str. E23...	154.0	[0..1]	[95..1]
gi\|117624563, gi... - gi\|117624563\|ref\|YP_853476.1\| hypothetical protein APECO1_4192 [Escherichia coli APEC O1], gi\|115513... gi\|91073251, gi\|... - gi\|91211677\|ref\|YP_541663.1\| hypothetical protein UTI89_C2666 [Escherichia coli UTI89], gi\|91073251\|... gi\|218366059, gi... - gi\|218559290\|ref\|YP_002392203.1\| hypothetical protein ECS88_2529 [Escherichia coli S88], gi\|21836605... gi\|148566137 - gi\|148566137\|gb\|ABQ88412.1\| hypothetical protein ECRS218_0032 [Enterobacteria phage CUS-3]	152.0	[0..1]	[96..1]
gi\|26990596, gi\|... - gi\|26990596\|ref\|NP_746021.1\| hypothetical protein PP_3891 [Pseudomonas putida KT2440], gi\|24985579\|g...	152.0	[0..2]	[96..4]
gi\|74312901, gi\|... - gi\|74312901\|ref\|YP_311320.1\| hypothetical protein SSON_2444 [Shigella sonnei Ss046], gi\|73856378\|gb\|...	151.0	[0..1]	[96..1]
gi\|9634209, gi\|6... - gi\|9634209\|ref\|NP_037748.1\| Gp66 [Enterobacteria phage HK97], gi\|6901638\|gb\|AAF31141.1\| Gp66 [Bacter...	151.0	[0..1]	[95..1]
gi\|13517590, gi\|... - gi\|13559854\|ref\|NP_112064.1\| hypothetical protein HK620p31 [Enterobacteria phage HK620], gi\|13517590...	151.0	[0..1]	[95..1]
gi\|77972130 - gi\|77972130\|ref\|ZP_00827706.1\| hypothetical protein YfreA_01004072 [Yersinia frederiksenii ATCC 3364...	151.0	[0..1]	[94..1]
gi\|19343393 - gi\|19343393\|ref\|NP_597903.1\| hypothetical protein HK022p50 [Enterobacteria phage HK022]	150.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLRKAARG RECQVRIPGV CNGNPETSVL AHIRLTGLCG TGTKPPDLIA TIACSACHDE  60
   61 IDRRTHFVDA GYAKECALEG MARTQVIWLK EGVIKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.508638
Match:	PF07102.3
Description:	No description for PF07102.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.878	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits