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View Structure Prediction Details

Protein: YBBB_ECOLI, SELU...
Organism: Escherichia coli
Length: 364 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBBB_ECOLI, SELU....

Description E-value Query
Range		 Subject
Range
SELU_PSE14 - tRNA 2-selenouridine synthase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=...
 365.0 [0..9] [364..7]
SELU_PSEU2 - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=selU PE=3 SV=1
 363.0 [0..9] [364..7]
SELU_SHESW - tRNA 2-selenouridine synthase OS=Shewanella sp. (strain W3-18-1) GN=selU PE=3 SV=1
SELU_SHEPC - tRNA 2-selenouridine synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=selU PE=3 ...
 361.0 [0..5] [362..6]
SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=selU PE=3 SV=1
SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato GN=selU PE=3 SV=1
 358.0 [0..9] [364..7]
SELU_PSEE4 - tRNA 2-selenouridine synthase OS=Pseudomonas entomophila (strain L48) GN=selU PE=3 SV=1
gi|95109198 - gi|95109198|emb|CAK13895.1| conserved hypothetical protein [Pseudomonas entomophila L48]
 357.0 [0..6] [364..4]
SELU_SHEON - tRNA 2-selenouridine synthase OS=Shewanella oneidensis (strain MR-1) GN=selU PE=3 SV=1
SO0195 - RNA 2-selenouridine synthase, ybbB
 356.0 [0..4] [362..5]
gi|188494642, gi... - gi|75514622|ref|ZP_00736877.1| COG2603: Predicted ATPase [Escherichia coli 53638], gi|188494642|ref|...
SELU_SHIDS - tRNA 2-selenouridine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=selU PE=3 SV=1
 355.0 [0..1] [364..1]
SELU_ECO24 - tRNA 2-selenouridine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=selU PE=3 SV=1
 355.0 [0..1] [364..1]
SELU_SHIBS - tRNA 2-selenouridine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=selU PE=3 SV=1
SELU_SHIB3 - tRNA 2-selenouridine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=selU PE...
 354.0 [0..1] [364..1]
SELU_SHEB9 - tRNA 2-selenouridine synthase OS=Shewanella baltica (strain OS195) GN=selU PE=3 SV=1
 354.0 [0..5] [363..6]

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Predicted Domain #1
Region A:
Residues: [1-269] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQERHTEQDY RALLIADTPI IDVRAPIEFE HGAMPAAINL PLMNNDERAA VGTCYKQQGS  60
   61 DAALALGHKL VAGEIRQQRM DAWRAACLQN PQGILCCARG GQRSHIVQSW LHAAGIDYPL 120
  121 VEGGYKALRQ TAIQATIELA QKPIVLIGGC TGSGKTLLVQ QQPNGVDLEG LARHRGSAFG 180
  181 RTLQPQLSQA SFENLLAAEM LKTDARQNLR LWVLEDESRM IGSNHLPECL RERMTQAAIA 240
  241 VVEDPFEIRL ERLNEEYFLR MHHDFTHAY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.045757
Match: 1bohA
Description: SULFUR-SUBSTITUTED RHODANESE (ORTHORHOMBIC FORM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
thiosulfate sulfurtransferase activity 3.4060283973149 bayes_pls_golite062009
sulfurtransferase activity 2.00214292806095 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 1.49017617674976 bayes_pls_golite062009
catalytic activity 1.05774816707958 bayes_pls_golite062009
transferase activity 0.503171603133473 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [270-364] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDEQGWQEYC EYLHHGLSAI KRRLGLQRYN ELAARLDAAL TTQLTTGSTD GHLAWLVPLL  60
   61 EEYYDPMYRY QLEKKAEKVV FRGEWAEVAE WVKAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.811 0.080 transferase activity a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle