YRC Public Data Repository - Protein Structure Prediction

Protein:	VATG1_BOVIN
Organism:	Bos taurus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATG1_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	157.0	[0..1]	[117..105]
gi\|109149627, gi... - gi\|109149627\|ref\|XP_001084453.1\| PREDICTED: similar to vacuolar H+ ATPase G1 [Macaca mulatta], gi\|10... CCDS6807.1_1 - null	140.0	[0..1]	[118..1]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	140.0	[0..1]	[118..1]
ATP6V1G1 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 gi\|55632251 - gi\|55632251\|ref\|XP_528400.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 2 [Pan trogl...	139.0	[0..1]	[118..1]
gi\|114626332 - gi\|114626332\|ref\|XP_001155506.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 1 [Pan t...	137.0	[0..1]	[118..1]
gi\|33585956, gi\|... - gi\|33585956\|gb\|AAH56050.1\| Atp6v1g1 protein [Xenopus laevis], gi\|148231664\|ref\|NP_001080436.1\| ATPas...	135.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQSQGIQQ LLQAEKRAAE KVSEARKRKN RRLKQAKEEA QAEVEQYRLQ REKEFKAKEA  60
   61 AALGSHGSCS TEVEKDTQEK MTILQTYFQQ NRDEVLDNLL AFVCDIRPEI HENYRING

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.619789
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.953	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits