YRC Public Data Repository - Protein Structure Prediction

Protein:	UPPS_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPPS_SYNY3.

Description	E-value	Query Range	Subject Range
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	372.0	[0..6]	[249..4]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	369.0	[0..1]	[249..1]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	369.0	[0..1]	[249..1]
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	369.0	[0..1]	[249..1]
ISPT_THEEB - Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1 UPPS_SYNEL - Undecaprenyl pyrophosphate synthetase OS=Synechococcus elongatus GN=uppS PE=3 SV=1	367.0	[0..1]	[249..3]
gi\|67922228, gi\|... - gi\|67922228\|ref\|ZP_00515742.1\| Di-trans-poly-cis-decaprenylcistransferase [Crocosphaera watsonii WH ...	363.0	[0..4]	[249..35]
ISPT_GLOVI - Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421) GN=uppS PE=3 SV=1 UPPS_GLOVI - Undecaprenyl pyrophosphate synthase OS=Gloeobacter violaceus GN=uppS PE=3 SV=1	357.0	[0..1]	[249..1]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	357.0	[0..9]	[249..9]
gi\|53763097, gi\|... - gi\|81299075\|ref\|YP_399283.1\| undecaprenyl pyrophosphate synthetase [Synechococcus elongatus PCC 7942... gi\|56686217, gi\|... - gi\|56751258\|ref\|YP_171959.1\| undecaprenyl pyrophosphate synthetase [Synechococcus elongatus PCC 6301...	356.0	[0..9]	[249..10]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKPVILET LPPDLDQQRL PQHVAVIMDG NGRWAKQRGM PRIMGHQRGV DSLKNLLRCC  60
   61 DDWGIAALTA YAFSTENWGR PLEEVEFLMT LFERVLRREL KEMMAENVRI RFVGNLTSLP 120
  121 RSLQDEIARS MEDTKNNTGI RFTVATNYGG RQEIVHVCQA IAREVQSGKL DPETIDEGVV 180
  181 EKYLYTEGLS HPDLLIRTSG ELRISNFLLW QMAYAEIYVT STLWPDFDRQ AFHLALRDYQ 240
  241 QRHRRFGKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.045757
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.40397054534951	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
transferase activity	1.42376896518855	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
dehydrodolichyl diphosphate synthase activity	0.761527128946352	bayes_pls_golite062009
binding	0.747530931796963	bayes_pls_golite062009
protein binding	0.331797220769091	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: