YRC Public Data Repository - Protein Structure Prediction

Protein:	SULA_ECOLX
Organism:	Escherichia coli
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SULA_ECOLX.

Description	E-value	Query Range	Subject Range
RECA_HAHCH - Protein RecA OS=Hahella chejuensis (strain KCTC 2396) GN=recA PE=3 SV=1	183.0	[0..3]	[164..31]
RECA_MARHV - Protein RecA OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8) GN=recA PE...	179.0	[0..3]	[150..31]
gi\|89083852, gi\|... - gi\|89092117\|ref\|ZP_01165072.1\| recombinase A [Oceanospirillum sp. MED92], gi\|89083852\|gb\|EAR63069.1\|...	179.0	[0..3]	[150..31]
gi\|2119989 - pir\|\|I39509 recombination protein recA - Acinetobacter calcoaceticus RECA_ACIAD - Protein RecA OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=recA PE=3 SV=1	179.0	[0..6]	[164..34]
gi\|90309945, gi\|... - gi\|90408944\|ref\|ZP_01217078.1\| putative RecA protein [Psychromonas sp. CNPT3], gi\|90309945\|gb\|EAS380...	179.0	[0..8]	[164..39]
gi\|71361898 - gi\|71361898\|gb\|AAZ30056.1\| recombinant protein A [Moraxella catarrhalis]	179.0	[0..11]	[164..40]
gi\|89143137 - gi\|89143137\|emb\|CAJ41870.1\| recombinase A [Pseudochrobactrum asaccharolyticum]	178.0	[0..8]	[164..31]
gi\|109254800 - gi\|109254800\|emb\|CAK22262.1\| recombinase A [Pseudochrobactrum kiredjianiae]	177.0	[0..8]	[164..28]
gi\|89143139 - gi\|89143139\|emb\|CAJ41871.1\| recombinase A [Pseudochrobactrum saccharolyticum]	177.0	[0..8]	[164..31]
gi\|85374373, gi\|... - gi\|85374373\|ref\|YP_458435.1\| recombinase A [Erythrobacter litoralis HTCC2594], gi\|84787456\|gb\|ABC636...	177.0	[0..5]	[164..44]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTSGYAHRS SSFSSAASKI ARVSTENTTA GLISEVVYRE DQPMMTQLLL LPLLQQLGQQ  60
   61 SRWQLWLTPQ QKLSREWVQA SGLPLTKVMQ ISQLSPCHTV ESMVRALRTG NYSVVIGWLA 120
  121 DDLTEEEHAE LVDAANEGNA MGFIMRPVSA SSHATRQLSG LKIHSNLYH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1n03A
Description:	RecA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.70951650603803	bayes_pls_golite062009
pyrophosphatase activity	1.67001321748055	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.65957796124263	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.65897844340974	bayes_pls_golite062009
hydrolase activity	0.86097911121458	bayes_pls_golite062009
catalytic activity	0.828877635849693	bayes_pls_golite062009
binding	0.155810596797762	bayes_pls_golite062009
nucleotide binding	0.0886605793289371	bayes_pls_golite062009
purine ribonucleotide binding	0.0467569724903217	bayes_pls_golite062009
ribonucleotide binding	0.0463033715921637	bayes_pls_golite062009
purine nucleotide binding	0.0266840790120598	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: