YRC Public Data Repository - Protein Structure Prediction

Protein:	SUFI_ECOLI
Organism:	Escherichia coli
Length:	470 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUFI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77959540, gi\|... - gi\|77959540\|ref\|ZP_00823559.1\| COG2132: Putative multicopper oxidases [Yersinia bercovieri ATCC 4397...	327.0	[0..1]	[470..1]
gi\|238789168, gi... - gi\|77974148\|ref\|ZP_00829690.1\| COG2132: Putative multicopper oxidases [Yersinia frederiksenii ATCC 3...	326.0	[0..1]	[470..1]
gi\|74313559, gi\|... - gi\|74313559\|ref\|YP_311978.1\| repressor protein for FtsI [Shigella sonnei Ss046], gi\|73857036\|gb\|AAZ8...	325.0	[0..1]	[470..1]
FTSP_SHIDS - Cell division protein FtsP OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ftsP PE=3 SV=1	325.0	[0..1]	[470..1]
gi\|227887728, gi... - gi\|227887728\|ref\|ZP_04005533.1\| multicopper oxidase [Escherichia coli 83972], gi\|227835124\|gb\|EEJ455... gi\|192959383, gi... - gi\|75239403\|ref\|ZP_00723374.1\| COG2132: Putative multicopper oxidases [Escherichia coli E110019], gi... gi\|218691315, gi... - gi\|218691315\|ref\|YP_002399527.1\| repressor protein for FtsI [Escherichia coli ED1a], gi\|218428879\|em... gi\|75229299, gi\|... - gi\|75229299\|ref\|ZP_00715858.1\| COG2132: Putative multicopper oxidases [Escherichia coli B7A], gi\|191... gi\|218353457, gi... - gi\|218696725\|ref\|YP_002404392.1\| repressor protein for FtsI [Escherichia coli 55989], gi\|218353457\|e... gi\|75212341, gi\|... - gi\|75212341\|ref\|ZP_00712365.1\| COG2132: Putative multicopper oxidases [Escherichia coli B171], gi\|19... gi\|157076953, gi... - gi\|75187836\|ref\|ZP_00701103.1\| COG2132: Putative multicopper oxidases [Escherichia coli E24377A], gi... gi\|187430531, gi... - gi\|75178921\|ref\|ZP_00698957.1\| COG2132: Putative multicopper oxidases [Shigella boydii BS512], gi\|18... gi\|24053481, gi\|... - gi\|24114322\|ref\|NP_708832.1\| repressor protein for FtsI [Shigella flexneri 2a str. 301], gi\|24053481... gi\|209759618, gi... - pir\|\|E85961 suppressor of ftsI [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pi... gi\|13363373, gi\|... - gi\|15833155\|ref\|NP_311928.1\| suppressor of ftsI [Escherichia coli O157:H7], gi\|13363373\|dbj\|BAB37324... gi\|30042627, gi\|... - gi\|30064370\|ref\|NP_838541.1\| repressor protein for FtsI [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|12517586, gi\|... - gi\|15803561\|ref\|NP_289594.1\| repressor protein for FtsI [Escherichia coli O157:H7 EDL933], gi\|125175... gi\|91074009, gi\|... - gi\|91212435\|ref\|YP_542421.1\| repressor protein for FtsI [Escherichia coli UTI89], gi\|91074009\|gb\|ABE... gi\|117625325, gi... - gi\|117625325\|ref\|YP_854526.1\| repressor protein for FtsI [Escherichia coli APEC O1], gi\|115514449\|gb... gi\|13363373, gi\|... - gi\|15833155\|ref\|NP_311928.1\| repressor protein for FtsI [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110344852, gi... - gi\|110643260\|ref\|YP_670990.1\| repressor protein for FtsI [Escherichia coli 536], gi\|110344852\|gb\|ABG... gi\|110806914, gi... - gi\|110806914\|ref\|YP_690434.1\| repressor protein for FtsI [Shigella flexneri 5 str. 8401], gi\|1106164... gi\|168747476, gi... - gi\|188017891\|gb\|EDU56013.1\| protein SufI [Escherichia coli O157:H7 str. EC4113], gi\|168747476\|ref\|ZP... gi\|189358575, gi... - gi\|189358575\|gb\|EDU76994.1\| protein SufI [Escherichia coli O157:H7 str. EC4401], gi\|168753984\|ref\|ZP... gi\|208806142, gi... - gi\|208806142\|ref\|ZP_03248479.1\| protein SufI [Escherichia coli O157:H7 str. EC4206], gi\|208725943\|gb... gi\|208812973, gi... - gi\|208812973\|ref\|ZP_03254302.1\| protein SufI [Escherichia coli O157:H7 str. EC4045], gi\|208734250\|gb... gi\|208818481, gi... - gi\|208818481\|ref\|ZP_03258801.1\| protein SufI [Escherichia coli O157:H7 str. EC4042], gi\|208738604\|gb... gi\|209161859, gi... - gi\|209400459\|ref\|YP_002272493.1\| protein SufI [Escherichia coli O157:H7 str. EC4115], gi\|209161859\|g... gi\|209920491, gi... - gi\|209920491\|ref\|YP_002294575.1\| repressor protein for FtsI [Escherichia coli SE11], gi\|209913750\|db... gi\|217326910, gi... - gi\|217326910\|ref\|ZP_03442993.1\| protein SufI [Escherichia coli O157:H7 str. TW14588], gi\|217319277\|g... gi\|75259959, gi\|... - gi\|75259959\|ref\|ZP_00731237.1\| COG2132: Putative multicopper oxidases [Escherichia coli E22], gi\|193... gi\|218362357, gi... - gi\|218555589\|ref\|YP_002388502.1\| repressor protein for FtsI [Escherichia coli IAI1], gi\|218362357\|em... gi\|190907206, gi... - gi\|75240526\|ref\|ZP_00724454.1\| COG2132: Putative multicopper oxidases [Escherichia coli F11], gi\|191... gi\|218560096, gi... - gi\|218560096\|ref\|YP_002393009.1\| repressor protein for FtsI [Escherichia coli S88], gi\|218366865\|emb... gi\|189369419, gi... - gi\|189369419\|gb\|EDU87835.1\| protein SufI [Escherichia coli O157:H7 str. EC4501], gi\|168760175\|ref\|ZP... gi\|168767037, gi... - gi\|189363872\|gb\|EDU82291.1\| protein SufI [Escherichia coli O157:H7 str. EC4486], gi\|168767037\|ref\|ZP... gi\|168773329, gi... - gi\|187770955\|gb\|EDU34799.1\| protein SufI [Escherichia coli O157:H7 str. EC4196], gi\|168773329\|ref\|ZP... gi\|189000613, gi... - gi\|189000613\|gb\|EDU69599.1\| protein SufI [Escherichia coli O157:H7 str. EC4076], gi\|168781890\|ref\|ZP... gi\|168785888, gi... - gi\|189374109\|gb\|EDU92525.1\| protein SufI [Escherichia coli O157:H7 str. EC869], gi\|168785888\|ref\|ZP_... gi\|168797606, gi... - gi\|189379859\|gb\|EDU98275.1\| protein SufI [Escherichia coli O157:H7 str. EC508], gi\|168797606\|ref\|ZP_... gi\|170682156, gi... - gi\|170682156\|ref\|YP_001745287.1\| protein SufI [Escherichia coli SMS-3-5], gi\|170519874\|gb\|ACB18052.1... gi\|254594371, gi... - gi\|254794971\|ref\|YP_003079808.1\| divisomal assembly stabilization protein [Escherichia coli O157:H7 ... gi\|195937161 - gi\|195937161\|ref\|ZP_03082543.1\| repressor protein for FtsI [Escherichia coli O157:H7 str. EC4024] gi\|237706231, gi... - gi\|237706231\|ref\|ZP_04536712.1\| repressor protein for FtsI [Escherichia sp. 3_2_53FAA], gi\|226899271...	325.0	[0..1]	[470..1]
gi\|238719237, gi... - gi\|77962280\|ref\|ZP_00826102.1\| COG2132: Putative multicopper oxidases [Yersinia mollaretii ATCC 4396...	324.0	[0..1]	[470..1]
gi\|26249588, gi\|... - gi\|26249588\|ref\|NP_755628.1\| repressor protein for FtsI [Escherichia coli CFT073], gi\|26109996\|gb\|AA...	324.0	[0..1]	[470..1]
gi\|81246689, gi\|... - gi\|82545278\|ref\|YP_409225.1\| repressor protein for FtsI [Shigella boydii Sb227], gi\|81246689\|gb\|ABB6...	322.0	[0..1]	[470..1]
gi\|152958492, gi... - gi\|77630395\|ref\|ZP_00792981.1\| COG2132: Putative multicopper oxidases [Yersinia pseudotuberculosis I...	321.0	[0..1]	[470..1]
gi\|186699854, gi... - gi\|186896828\|ref\|YP_001873940.1\| repressor protein for FtsI [Yersinia pseudotuberculosis PB1/+], gi\|... gi\|167469327 - gi\|167469327\|ref\|ZP_02334031.1\| SufI protein [Yersinia pestis FV-1] gi\|229696933, gi... - gi\|229840567\|ref\|ZP_04460726.1\| putative cell division protein precursor [Yersinia pestis biovar Ori... gi\|229842884, gi... - gi\|229842884\|ref\|ZP_04463036.1\| putative cell division protein precursor [Yersinia pestis biovar Ori... gi\|166009065, gi... - gi\|166009065\|ref\|ZP_02229963.1\| SufI protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|165923088, gi... - gi\|165924888\|ref\|ZP_02220720.1\| SufI protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|167399324, gi... - gi\|167399324\|ref\|ZP_02304848.1\| SufI protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|77636093, gi\|... - gi\|77636093\|ref\|ZP_00798170.1\| COG2132: Putative multicopper oxidases [Yersinia pestis Angola], gi\|1... gi\|166211823, gi... - gi\|166211823\|ref\|ZP_02237858.1\| SufI protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167425162, gi... - gi\|167425162\|ref\|ZP_02316915.1\| SufI protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|167419059, gi... - gi\|167419059\|ref\|ZP_02310812.1\| SufI protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|165939895, gi... - gi\|89102542\|ref\|ZP_01175168.1\| COG2132: Putative multicopper oxidases [Yersinia pestis biovar Orient... gi\|108781022, gi... - gi\|108809109\|ref\|YP_653025.1\| repressor protein for FtsI [Yersinia pestis Antiqua], gi\|108781022\|gb\|... gi\|229682233, gi... - gi\|229900894\|ref\|ZP_04516018.1\| putative cell division protein precursor [Yersinia pestis Nepal516],... FTSP_YERPE - Cell division protein FtsP OS=Yersinia pestis GN=ftsP PE=3 SV=1 gi\|51597688, gi\|... - gi\|51597688\|ref\|YP_071879.1\| repressor protein for FtsI [Yersinia pseudotuberculosis IP 32953], gi\|5... gi\|21960464, gi\|... - gi\|22127378\|ref\|NP_670801.1\| repressor protein for FtsI [Yersinia pestis KIM], gi\|21960464\|gb\|AAM870... gi\|218927866, gi... - gi\|218927866\|ref\|YP_002345741.1\| repressor protein for FtsI [Yersinia pestis CO92], gi\|16120998\|ref\|... Q665X0\|Q665X0_YERPS - Putative cell division protein precursor - Yersinia pseudotuberculosis gi\|149289703, gi... - gi\|150260295\|ref\|ZP_01917023.1\| putative cell division protein [Yersinia pestis CA88-4125], gi\|14928... gi\|145597767, gi... - gi\|145597767\|ref\|YP_001161843.1\| repressor protein for FtsI [Yersinia pestis Pestoides F], gi\|145209...	320.0	[0..1]	[470..1]

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Predicted Domain #1

Region A:
Residues: [1-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRRQFIQ ASGIALCAGA VPLKASAAGQ QQPLPVPPLL ESRRGQPLFM TVQRAHWSFT  60
   61 PGTRASVWGI NGRYLGPTIR VWKGDDVKLI YSNRLTENVS MTVAGLQVPG PLMGGPARMM 120
  121 SPNADWAPVL PIRQNAATLW YHANTPNRTA QQVYNGLAGM WLVEDEVSKS LPIPNHYGVD 180
  181 DFPVIIQDKR LDNFGTPEYN EPGSGGFVGD TLLVNGVQSP YVEVSRGWVR LRLLNASNSR 240
  241 RYQLQMNDGR PLHVISGDQG FLPAPVSVKQ LSLAPGERRE ILVDMSNGDE VSITCGEAAS 300
  301 IVDRIRGFFE PSSILVSTLV LTLRPTGLLP LVTDSLPMRL LPTEIMAGSP IRSRDISLGD 360
  361 DPGINGQLWD VNRIDVTAQQ GTWERWTVRA DEPQAFHIEG VMFQIRNVNG AMPFPEDRGW 420
  421 KDTVWVDGQV ELLVYFGQPS WAHFPFYFNS QTLEMADRGS IGQLLVNPVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.221849
Match:	1kv7A
Description:	multi-copper oxidase CueO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, oxidizing metal ions	1.55524630095061	bayes_pls_golite062009
binding	0.582547842165401	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.379596275876029	bayes_pls_golite062009
catalytic activity	0.363071622766357	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.324410699993373	bayes_pls_golite062009
cytochrome-c oxidase activity	0.222255654263847	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.222255654263847	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.222255654263847	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.142849955342033	bayes_pls_golite062009
protein binding	0.0393017564630179	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: