YRC Public Data Repository - Protein Structure Prediction

Protein:	SSB2_SALTI
Organism:	Salmonella typhi
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSB2_SALTI.

Description	E-value	Query Range	Subject Range
gi\|75231353, gi\|... - gi\|75231353\|ref\|ZP_00717741.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli B7A], ...	6.0E-57	[1..177]	[1..171]
gi\|62178902, gi\|... - gi\|62178902\|ref\|YP_215319.1\| ssDNA-binding protein controls activity of RecBCD nuclease [Salmonella ...	9.0E-55	[1..177]	[1..168]
gi\|84780626, gi\|... - gi\|85060106\|ref\|YP_455808.1\| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...	1.0E-54	[1..162]	[1..175]
SSB_PROVU - Single-stranded DNA-binding protein OS=Proteus vulgaris GN=ssb PE=3 SV=1	4.0E-54	[1..177]	[1..194]
SSB_BPP1 - Single-stranded DNA-binding protein OS=Enterobacteria phage P1 GN=ssb PE=3 SV=1	5.0E-54	[1..162]	[1..162]
gi\|37528177, gi\|... - gi\|37528177\|ref\|NP_931522.1\| single-strand DNA-binding protein [Photorhabdus luminescens subsp. laum...	1.0E-53	[1..162]	[1..178]
gi\|147870 - gi\|147870\|gb\|AAA24649.1\| single-strand DNA-binding protein (ssb) [Escherichia coli]	1.0E-53	[1..162]	[1..178]
gi\|17977995 - gi\|17977995\|emb\|CAC83134.1\| putative single stranded DNA-binding protein [Bacteriophage CP-1639]	1.0E-53	[4..177]	[3..170]
gi\|75179580, gi\|... - gi\|75179580\|ref\|ZP_00699584.1\| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...	2.0E-53	[1..162]	[1..171]
gi\|30410826 - gi\|30410826\|ref\|NP_660857.2\| single-strand binding protein [Buchnera aphidicola str. Sg (Schizaphis ...	3.0E-53	[1..162]	[15..176]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKGVNKVI LVGNLGQDPE VRYMPNGGAV VNLSLATSDT WTDKQTGDKK ERTEWHRVVL  60
   61 YGKLAEIASE YLRKGSQVYI EGALRTRKWT DQSGVEKYTT EVVVSQSGTM QMLGGRNSAG 120
  121 SGQQQGGWGQ PQQPAAPSHS GMPPQQHPAN EPPMDFDDDI PFAPFGHSVA RHALYVLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.26271782657431	bayes_pls_golite062009
binding	2.01819468874386	bayes_pls_golite062009
DNA binding	1.81052012500635	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: