YRC Public Data Repository - Protein Structure Prediction

Protein:	SOXR_ECOLI
Organism:	Escherichia coli
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOXR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115515467, gi... - gi\|117626343\|ref\|YP_859666.1\| redox-sensitive transcriptional activator SoxR [Escherichia coli APEC ... gi\|218429917, gi... - gi\|218692353\|ref\|YP_002400565.1\| DNA-binding transcriptional dual regulator, Fe-S center for redox-s... gi\|215489409, gi... - gi\|215489409\|ref\|YP_002331840.1\| DNA-binding transcriptional dual regulator, Fe-Scenter for redox-se... gi\|218561146, gi... - gi\|218561146\|ref\|YP_002394059.1\| DNA-binding transcriptional dual regulator, Fe-S center for redox-s... gi\|110644410, gi... - gi\|110644410\|ref\|YP_672140.1\| redox-sensitive transcriptional activator SoxR [Escherichia coli 536],... gi\|91075176, gi\|... - gi\|91213602\|ref\|YP_543588.1\| redox-sensitive transcriptional activator SoxR [Escherichia coli UTI89]... gi\|227836055, gi... - gi\|227886914\|ref\|ZP_04004719.1\| redox-sensitive transcriptional activator SoxR [Escherichia coli 839... gi\|237703637, gi... - gi\|237703637\|ref\|ZP_04534118.1\| redox-sensitive transcriptional activator soxR [Escherichia sp. 3_2_... gi\|26250866, gi\|... - gi\|26250866\|ref\|NP_756906.1\| redox-sensitive transcriptional activator SoxR [Escherichia coli CFT073...	152.0	[0..1]	[154..1]
gi\|619231 - gi\|619231\|gb\|AAB31680.1\| SoxR [Escherichia coli]	151.0	[0..1]	[154..1]
gi\|75241103, gi\|... - gi\|75241103\|ref\|ZP_00724977.1\| COG0789: Predicted transcriptional regulators [Escherichia coli F11],...	151.0	[0..1]	[154..1]
gi\|213424533 - gi\|213424533\|ref\|ZP_03357329.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str.... gi\|213053527 - gi\|213053527\|ref\|ZP_03346405.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str.... gi\|213024580 - gi\|213024580\|ref\|ZP_03339027.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str.... gi\|207859419, gi... - gi\|207859419\|ref\|YP_002246070.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Enteritid... gi\|187370713 - gi\|187370713\|gb\|ACD02419.1\| SoxR [Salmonella enterica subsp. enterica serovar Senftenberg] gi\|187370711 - gi\|187370711\|gb\|ACD02418.1\| SoxR [Salmonella enterica subsp. enterica serovar Gallinarum] gi\|224470562, gi... - gi\|224586034\|ref\|YP_002639833.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|213648673 - gi\|213648673\|ref\|ZP_03378726.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str.... lcl\|NC_016856.1_... - [gene=soxR] [protein=redox-sensing transcriptional activator] [protein_id=YP_005240563.1] [location=... SOXR_SALTY - Redox-sensitive transcriptional activator SoxR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... gi\|29140072, gi\|... - gi\|29144434\|ref\|NP_807776.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty... SOXR_SALTI - Redox-sensitive transcriptional activator soxR OS=Salmonella typhi GN=soxR PE=3 SV=1 SOXR_SALTY - Redox-sensitive transcriptional activator soxR OS=Salmonella typhimurium GN=soxR PE=3 SV=1 SOXR_SALTI - Redox-sensitive transcriptional activator SoxR OS=Salmonella typhi GN=soxR PE=3 SV=1 gi\|205334188, gi... - gi\|205334188\|gb\|EDZ20952.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|205330132, gi... - gi\|205330132\|gb\|EDZ16896.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|16762947 - gi\|16762947\|ref\|NP_458564.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Typhi str. CT... gi\|205323053, gi... - gi\|205323053\|gb\|EDZ10892.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|161617402, gi... - gi\|161617402\|ref\|YP_001591367.1\| hypothetical protein SPAB_05257 [Salmonella enterica subsp. enteric... gi\|197364992, gi... - gi\|197364992\|ref\|YP_002144629.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|197265047, gi... - gi\|197265047\|ref\|ZP_03165121.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica ... gi\|197248541, gi... - gi\|197248541\|ref\|YP_002149180.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica... gi\|194737432, gi... - gi\|194737432\|ref\|YP_002117199.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica... gi\|205274817, gi... - gi\|205355036\|ref\|YP_002228837.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Gallinaru... gi\|204323814, gi... - gi\|204927149\|ref\|ZP_03218351.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica ... gi\|199603697, gi... - gi\|200386599\|ref\|ZP_03213211.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica ... gi\|198242239, gi... - gi\|198242239\|ref\|YP_002218160.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica... gi\|195630547, gi... - gi\|195630547\|gb\|EDX49159.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|238912723 - gi\|238912723\|ref\|ZP_04656560.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Tennessee ... gi\|168263404, gi... - gi\|205347977\|gb\|EDZ34608.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|205337356, gi... - gi\|205337356\|gb\|EDZ24120.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|62182715, gi\|... - gi\|62182715\|ref\|YP_219132.1\| redox-sensing transcriptional activator SoxR [Salmonella enterica subsp... gi\|168236964, gi... - gi\|197289942\|gb\|EDY29301.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs... gi\|56130322, gi\|... - gi\|56416065\|ref\|YP_153140.1\| SoxR protein [Salmonella enterica subsp. enterica serovar Paratyphi A s... gi\|194469370, gi... - gi\|194469370\|ref\|ZP_03075354.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica ... SOXR_SALTY - Redox-sensitive transcriptional activator soxR OS=Salmonella typhimurium GN=soxR PE=3 SV=1 gi\|194410183, gi... - gi\|194451879\|ref\|YP_002048257.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica... gi\|194445383, gi... - gi\|194445383\|ref\|YP_002043517.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica... gi\|168821282, gi... - gi\|205342066\|gb\|EDZ28830.1\| redox-sensitive transcriptional activator SoxR [Salmonella enterica subs...	149.0	[0..1]	[152..1]
gi\|58700302, gi\|... - gi\|66735141\|gb\|AAY53811.1\| SoxR [Sphingopyxis alaskensis RB2256], gi\|58700302\|gb\|AAW78364.2\| SoxR [S...	149.0	[0..1]	[154..1]
gi\|83632335, gi\|... - gi\|83644292\|ref\|YP_432727.1\| redox-sensitive transcriptional activator SoxR [Hahella chejuensis KCTC...	148.0	[0..10]	[152..11]
gi\|1421772\|gb\|AA... - SoxR gi\|1421772 - gi\|1421772\|gb\|AAB03869.1\| SoxR	148.0	[0..1]	[152..1]
gi\|15074758 - gi\|15074758\|emb\|CAC46403.1\| Probable transcriptional regulator [Sinorhizobium meliloti 1021] gi\|15965577 - gi\|15965577\|ref\|NP_385930.1\| putative transcription regulator protein [Sinorhizobium meliloti 1021]	146.0	[0..2]	[151..3]
gi\|85708018, gi\|... - gi\|85708018\|ref\|ZP_01039084.1\| redox-sensitive transcriptional activator SoxR [Erythrobacter sp. NAP...	146.0	[0..1]	[152..1]
gi\|94553048, gi\|... - gi\|94970998\|ref\|YP_593046.1\| MerR family transcriptional regulator [Candidatus Koribacter versatilis...	145.0	[0..5]	[152..1]

Back

Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKLPRIKA LLTPGEVAKR SGVAVSALHF YESKGLITSI RNSGNQRRYK RDVLRYVAII  60
   61 KIAQRIGIPL ATIGEAFGVL PEGHTLSAKE WKQLSSQWRE ELDRRIHTLV ALRDELDGCI 120
  121 GCGCLSRSDC PLRNPGDRLG EEGTGARLLE DEQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.40729334364274	bayes_pls_golite062009
DNA binding	2.05877861880033	bayes_pls_golite062009
nucleic acid binding	1.99474406643819	bayes_pls_golite062009
transcription factor activity	1.84836087644732	bayes_pls_golite062009
binding	1.32395331736751	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: