YRC Public Data Repository - Protein Structure Prediction

Protein:	SAPB_ECOLI
Organism:	Escherichia coli
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAPB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68342559, gi\|... - gi\|70728260\|ref\|YP_258009.1\| dipeptide ABC transporter, permease protein [Pseudomonas fluorescens Pf...	265.0	[0..1]	[317..19]
gi\|24982296, gi\|... - gi\|26987617\|ref\|NP_743042.1\| alkaline phosphatase [Pseudomonas putida KT2440], gi\|24982296\|gb\|AAN665... gi\|148546163, gi... - gi\|82736045\|ref\|ZP_00898906.1\| dipeptide ABC transporter, permease protein [Pseudomonas putida F1], ... tr\|I7AY84\|I7AY84... - Alkaline phosphatase OS=Pseudomonas putida (strain DOT-T1E) GN=dppB PE=3 SV=1	265.0	[0..1]	[317..1]
gi\|95109259 - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48... gi\|95109259, gi\|... - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48...	265.0	[0..1]	[317..1]
gi\|194549822, gi... - gi\|254238837\|ref\|ZP_04932160.1\| hypothetical protein PACG_05003 [Pseudomonas aeruginosa C3719], gi\|1... gi\|15599699, gi\|... - gi\|9950743\|gb\|AAG07891.1\|AE004864_3 probable permease of ABC transporter [Pseudomonas aeruginosa PAO... gi\|11351690 - pir\|\|C83082 probable permease of ABC transporter PA4503 [imported] - Pseudomonas aeruginosa (strain ... gi\|150959758, gi... - gi\|152984600\|ref\|YP_001350453.1\| ABC transporter permease [Pseudomonas aeruginosa PA7], gi\|150959758...	265.0	[0..1]	[317..1]
gi\|218773823, gi... - gi\|218893595\|ref\|YP_002442464.1\| putative permease of ABC transporter [Pseudomonas aeruginosa LESB58... gi\|126198063, gi... - gi\|254244685\|ref\|ZP_04938007.1\| permease of ABC transporter [Pseudomonas aeruginosa 2192], gi\|194555... gi\|116052534, gi... - gi\|116052534\|ref\|YP_792848.1\| ABC transporter permease [Pseudomonas aeruginosa UCBPP-PA14], gi\|11558...	264.0	[0..1]	[317..1]
gi\|67544032, gi\|... - gi\|67544032\|ref\|ZP_00421962.1\| Binding-protein-dependent transport systems inner membrane component ...	263.0	[0..1]	[317..1]
gi\|46311103, gi\|... - gi\|78067860\|ref\|YP_370629.1\| oligopeptide/dipeptide ABC transporter, inner membrane subunit [Burkhol...	263.0	[0..1]	[317..1]
gi\|115265533 - gi\|115265533\|dbj\|BAF32795.1\| permease of dipeptide ABC transporter [Pseudomonas syringae pv. actinid...	262.0	[0..1]	[317..1]
gi\|63258173, gi\|... - gi\|66047466\|ref\|YP_237307.1\| binding-protein dependent transport system inner membrane protein [Pseu...	261.0	[0..1]	[317..1]
gi\|153946908, gi... - gi\|77631034\|ref\|ZP_00793620.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|229904324, gi... - gi\|229904324\|ref\|ZP_04519435.1\| Dipeptide transport system permease protein DppB [Yersinia pestis Ne... Q664C8\|Q664C8_YERPS - ABC dipeptide transporter, permease subunit - Yersinia pseudotuberculosis gi\|51598131, gi\|... - gi\|51598131\|ref\|YP_072322.1\| dipeptide transporter permease DppB [Yersinia pseudotuberculosis IP 329... gi\|170022350, gi... - gi\|170022350\|ref\|YP_001718855.1\| dipeptide transporter permease DppB [Yersinia pseudotuberculosis YP... gi\|145600618, gi... - gi\|145600618\|ref\|YP_001164694.1\| dipeptide transporter permease DppB [Yersinia pestis Pestoides F], ...	261.0	[0..1]	[316..1]

Back

Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIFTLRRIL LLIVTLFLLT FVGFSLSYFT PHAPLQGASL WNAWVFWFNG LIHWDFGVSS  60
   61 INGQPIAEQL KEVFPATMEL CILAFGFALI VGIPVGMIAG ITRHKWQDNL INAIALLGFS 120
  121 IPVFWLALLL TLFCSLTLGW LPVSGRFDLL YEVKPITGFA LIDAWLSDSP WRDEMIMSAI 180
  181 RHMILPVITL SVAPTTEVIR LMRISTIEVY DQNYVKAAAT RGLSRFTILR RHVLHNALPP 240
  241 VIPRLGLQFS TMLTLAMITE MVFSWPGLGR WLINAIRQQD YAAISAGVMV CGSLVIIVNV 300
  301 ISDILGAMAN PLKHKEWYAL R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
active transmembrane transporter activity	3.53557366375377	bayes_pls_golite062009
primary active transmembrane transporter activity	3.41102860760524	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.40998687431391	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.39460410688414	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.39460410688414	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.3922219570272	bayes_pls_golite062009
substrate-specific transporter activity	3.35660988804142	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.29500813712593	bayes_pls_golite062009
ATPase activity, coupled	2.80474249103832	bayes_pls_golite062009
ATPase activity	2.58855821881295	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.57156140111438	bayes_pls_golite062009
pyrophosphatase activity	2.50452993839826	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.48616122804297	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.48393681978033	bayes_pls_golite062009
ion transmembrane transporter activity	2.19105850974987	bayes_pls_golite062009
cation transmembrane transporter activity	1.3782690920283	bayes_pls_golite062009
hydrolase activity	1.33157206625923	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.456706793218952	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: