YRC Public Data Repository - Protein Structure Prediction

Protein:	RS19_MYXGL
Organism:	Myxine glutinosa
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS19_MYXGL.

Description	E-value	Query Range	Subject Range
gi\|73948285 - gi\|73948285\|ref\|XP_533657.2\| PREDICTED: similar to ribosomal protein S19 [Canis familiaris]	280.0	[0..1]	[145..142]
gi\|114677415 - gi\|114677415\|ref\|XP_512692.2\| PREDICTED: similar to ribosomal protein S19 [Pan troglodytes]	275.0	[0..2]	[145..88]
gi\|60653357 - gi\|60653357\|gb\|AAX29373.1\| ribosomal protein S19 [synthetic construct]	272.0	[0..1]	[145..1]
gi\|109124930, gi... - gi\|109124930\|ref\|XP_001103598.1\| PREDICTED: similar to ribosomal protein S19 isoform 1 [Macaca mulat... RS19_PONAB - 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3 RPS19 - ribosomal protein S19 CCDS12588.1_1 - null gi\|149722178 - gi\|149722178\|ref\|XP_001501616.1\| PREDICTED: similar to ribosomal protein S19 [Equus caballus] gi\|149410258 - gi\|149410258\|ref\|XP_001509109.1\| PREDICTED: similar to S19 ribosomal protein [Ornithorhynchus anatin... gi\|164507151 - gi\|164507151\|gb\|ABY59788.1\| ribosomal protein S19 [Ailuropoda melanoleuca] ENSPTRT00000020505 - null gi\|157928282, gi... - gi\|60656401\|gb\|AAX32764.1\| ribosomal protein S19 [synthetic construct], gi\|157928282\|gb\|ABW03437.1\| ... gi\|90076586, gi\|... - gi\|90076586\|dbj\|BAE87973.1\| unnamed protein product [Macaca fascicularis], gi\|90075572\|dbj\|BAE87466.... RS19_BOVIN - 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3 gi\|126344107 - gi\|126344107\|ref\|XP_001363730.1\| PREDICTED: similar to novel lectin C-type domain containing protein... RS19_PONPY - 40S ribosomal protein S19 - Pongo pygmaeus (Orangutan)	272.0	[0..1]	[145..1]
RS19_MOUSE - 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3 RS19_RAT - 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3 gi\|57716 - gi\|57716\|emb\|CAA36003.1\| unnamed protein product [Rattus rattus]	272.0	[0..1]	[145..1]
gi\|62652556, gi\|... - gi\|62652556\|ref\|XP_576285.1\| PREDICTED: similar to 40S ribosomal protein S19 [Rattus norvegicus], gi...	269.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGYTVKDVN QQEFVKALAA FFKKSGKLKK PDWVDTVKLG KHKELAPFDI DWYYIRTASV  60
   61 ARHLYMRGGV GVGAMTKIYG GRQRNGTRPS HYSRGSRNVA RKVLQSLEML KMVEKDPNGG 120
  121 RRLTSIGQRD MDRIAGQVVV LSKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2v7fA
Description:	No description for 2v7fA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	5.29433336630028	bayes_pls_golite062009
structural molecule activity	5.07265721693681	bayes_pls_golite062009
transcription regulator activity	4.44907471960058	bayes_pls_golite062009
nucleic acid binding	3.97631536825798	bayes_pls_golite062009
DNA binding	3.93431504495991	bayes_pls_golite062009
binding	3.52874320222492	bayes_pls_golite062009
transcription factor activity	3.48782936574155	bayes_pls_golite062009
sequence-specific DNA binding	2.44917636781125	bayes_pls_golite062009
transcription activator activity	2.35901958718112	bayes_pls_golite062009
RNA binding	1.88227222208129	bayes_pls_golite062009
protein binding	1.80415286835431	bayes_pls_golite062009
transcription repressor activity	1.54960543048317	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.2152419300113	bayes_pls_golite062009
transcription factor binding	0.13558561552621	bayes_pls_golite062009
ligase activity	0.104213649382856	bayes_pls_golite062009
mRNA binding	0.036043970189533	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: