YRC Public Data Repository - Protein Structure Prediction

Protein:	RR14_MESVI
Organism:	Mesostigma viride
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR14_MESVI.

Description	E-value	Query Range	Subject Range
RR14_NEPOL - 30S ribosomal protein S14, chloroplastic OS=Nephroselmis olivacea GN=rps14 PE=3 SV=1	139.0	[0..1]	[100..1]
gi\|67853550, gi\|... - gi\|67924599\|ref\|ZP_00518013.1\| Ribosomal protein S14 [Crocosphaera watsonii WH 8501], gi\|67853550\|gb... gi\|172034998, gi... - gi\|172034998\|ref\|YP_001801499.1\| 30S ribosomal protein S14 [Cyanothece sp. ATCC 51142], gi\|171696452...	138.0	[0..1]	[100..1]
gi\|81299257, gi\|... - gi\|81299257\|ref\|YP_399465.1\| 30S ribosomal protein S14 [Synechococcus elongatus PCC 7942], gi\|811681... RS14_SYNP6 - 30S ribosomal protein S14 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsN ... gi\|2126517, gi\|1... - pir\|\|JC5120 ribosomal protein S14 - Synechococcus sp, gi\|1332417\|dbj\|BAA12724.1\| ribosomal protein ...	137.0	[0..1]	[100..1]
RS14_MARHV - 30S ribosomal protein S14 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	137.0	[0..1]	[100..1]
RS14_CHRSD - 30S ribosomal protein S14 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	136.0	[0..1]	[100..1]
gi\|25294745 - pir\|\|AB2302 30S ribosomal protein S14 [imported] - Nostoc sp. (strain PCC 7120) RS14_NOSS1 - 30S ribosomal protein S14 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsN PE=3 SV=1	136.0	[0..1]	[100..1]
RS14_THEEB - 30S ribosomal protein S14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsN PE=3 SV=1	135.0	[0..1]	[100..1]
gi\|86161752, gi\|... - gi\|87122984\|ref\|ZP_01078845.1\| 30S ribosomal subunit protein S14 [Marinomonas sp. MED121], gi\|861617...	135.0	[0..1]	[100..1]
RS14_ANAVT - 30S ribosomal protein S14 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsN PE=3 SV=1	135.0	[0..1]	[100..1]
RS14_DECAR - 30S ribosomal protein S14 OS=Dechloromonas aromatica (strain RCB) GN=rpsN PE=3 SV=1	135.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKSMIERE KKRQKLVNKY AVKRKELKEQ IKTSVSFEER FKLQLELQKL PRNSSPTRLH  60
   61 NRCSVTGRPK GYYRDFGLSR HVLREMAHEC LLPGVTKSSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1vs5N
Description:	No description for 1vs5N was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.46626105355287	bayes_pls_golite062009
structural molecule activity	5.9950507001335	bayes_pls_golite062009
binding	2.38688645545392	bayes_pls_golite062009
transcription regulator activity	2.06638295156835	bayes_pls_golite062009
nucleic acid binding	1.86905163192306	bayes_pls_golite062009
DNA binding	1.86136246408845	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.85717131429984	bayes_pls_golite062009
protein binding	1.60194768638501	bayes_pls_golite062009
transcription factor activity	1.28200214216555	bayes_pls_golite062009
transcription factor binding	1.02376991656046	bayes_pls_golite062009
sequence-specific DNA binding	0.48169971060149	bayes_pls_golite062009
transcription activator activity	0.42927665410421	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.33193976709857	bayes_pls_golite062009
transcription cofactor activity	0.29526103320546	bayes_pls_golite062009
ligand-dependent nuclear receptor activity	0.27479486808555	bayes_pls_golite062009
catalytic activity	0.101795606736461	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: