YRC Public Data Repository - Protein Structure Prediction

Protein:	RPOZ_ECOLI
Organism:	Escherichia coli
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOZ_ECOLI.

Description	E-value	Query Range	Subject Range
RPOZ_COLP3 - DNA-directed RNA polymerase subunit omega OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) G...	2.0E-24	[1..91]	[1..91]
RPOZ_PHOPR - DNA-directed RNA polymerase subunit omega OS=Photobacterium profundum (strain SS9) GN=rpoZ PE=3 SV=1 RPOZ_PHOPR - DNA-directed RNA polymerase subunit omega OS=Photobacterium profundum GN=rpoZ PE=3 SV=1	8.0E-24	[1..90]	[1..90]
gi\|90412682, gi\|... - gi\|90412682\|ref\|ZP_01220683.1\| DNA-directed RNA polymerase omega subunit [Photobacterium profundum 3...	1.0E-23	[1..90]	[1..90]
gi\|90437369, gi\|... - gi\|90581392\|ref\|ZP_01237187.1\| DNA-directed RNA polymerase omega subunit [Vibrio angustum S14], gi\|9...	3.0E-23	[1..91]	[1..91]
gi\|71554209, gi\|... - gi\|71733656\|ref\|YP_272503.1\| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae pv. pha...	3.0E-23	[1..86]	[27..113]
RPOZ_ACIAD - DNA-directed RNA polymerase subunit omega OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)...	4.0E-23	[1..89]	[1..89]
RPOZ_XANP2 - DNA-directed RNA polymerase subunit omega OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)...	6.0E-23	[1..89]	[1..91]
gi\|67154922, gi\|... - gi\|67154922\|ref\|ZP_00416667.1\| RNA polymerase, omega subunit [Azotobacter vinelandii AvOP], ref\|ZP_0... RPOZ_AZOVD - DNA-directed RNA polymerase subunit omega OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=r...	1.0E-22	[1..86]	[1..87]
gi\|70733345, gi\|... - gi\|70733345\|ref\|YP_263120.1\| DNA-directed RNA polymerase subunit omega [Pseudomonas fluorescens Pf-5...	2.0E-22	[1..86]	[20..106]
RPOZ_PSYA2 - DNA-directed RNA polymerase subunit omega OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rp... RPOZ_PSYAR - DNA-directed RNA polymerase subunit omega - Psychrobacter arcticum RPOZ_PSYCK - DNA-directed RNA polymerase subunit omega OS=Psychrobacter cryohalolentis (strain K5) GN=rpoZ PE=3 S...	3.0E-22	[1..68]	[1..68]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVTVQDAV EKIGNRFDLV LVAARRARQM QVGGKDPLVP EENDKTTVIA LREIEEGLIN  60
   61 NQILDVRERQ EQQEQEAAEL QAVTAIAEGR R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.84
Match:	2o5iE
Description:	No description for 2o5iE was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits