YRC Public Data Repository - Protein Structure Prediction

Protein:	RP5M_ECOLI
Organism:	Escherichia coli
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RP5M_ECOLI.

Description	E-value	Query Range	Subject Range
HPF_AZOVI - Ribosome hibernation promoting factor OS=Azotobacter vinelandii GN=hpf PE=3 SV=1	124.0	[0..1]	[92..1]
gi\|71909757, gi\|... - gi\|71909757\|ref\|YP_287344.1\| SSU ribosomal protein S30P / sigma 54 modulation protein [Dechloromonas...	124.0	[0..1]	[95..1]
gi\|54310344, gi\|... - gi\|54310344\|ref\|YP_131364.1\| putative sigma-54 modulation protein [Photobacterium profundum SS9], gi...	123.0	[0..1]	[95..3]
gi\|50119247, gi\|... - gi\|50119247\|ref\|YP_048414.1\| putative sigma(54) modulation protein [Pectobacterium atrosepticum SCRI...	123.0	[0..1]	[95..1]
gi\|90326013, gi\|... - gi\|90412998\|ref\|ZP_01220996.1\| putative sigma-54 modulation protein [Photobacterium profundum 3TCK],...	122.0	[0..1]	[95..1]
gi\|78485316, gi\|... - gi\|78485316\|ref\|YP_391241.1\| sigma 54 modulation protein/ribosomal protein S30EA [Thiomicrospira cru...	122.0	[0..1]	[95..1]
gi\|94415577, gi\|... - gi\|94415577\|ref\|ZP_01295417.1\| hypothetical protein PaerP_01002740 [Pseudomonas aeruginosa PA7], gi\|...	121.0	[0..1]	[91..1]
HPF_PSEPK - Ribosome hibernation promoting factor OS=Pseudomonas putida (strain KT2440) GN=hpf PE=3 SV=1 tr\|I7CG78\|I7CG78... - Putative sigma OS=Pseudomonas putida (strain DOT-T1E) GN=rpoX PE=4 SV=1 gi\|126357446, gi... - gi\|167031973\|ref\|YP_001667204.1\| sigma 54 modulation protein/ribosomal protein S30EA [Pseudomonas pu... HPF_PSEPU - Ribosome hibernation promoting factor OS=Pseudomonas putida GN=hpf PE=3 SV=1 gi\|148546233, gi... - gi\|82735976\|ref\|ZP_00898837.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Pseudomonas puti... tr\|E4R5T4\|E4R5T4... - RpoX OS=Pseudomonas putida (strain BIRD-1) GN=rpoX PE=4 SV=1	121.0	[0..1]	[94..1]
gi\|82741631, gi\|... - gi\|82741631\|ref\|ZP_00904348.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Shewanella sp. W... gi\|124508866, gi... - gi\|124547890\|ref\|ZP_01706697.1\| sigma 54 modulation protein/ribosomal protein S30EA [Shewanella putr...	121.0	[0..1]	[95..36]
gi\|7465518, gi\|45734 - pir\|\|T01754 hypothetical protein 102 - Pseudomonas putida, gi\|45734\|emb\|CAA34495.1\| ORF102 [Pseudomo...	121.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLNITGNNV EITEALREFV TAKFAKLEQY FDRINQVYVV LKVEKVTHTS DATLHVNGGE  60
   61 IHASAEGQDM YAAIDGLIDK LARQLTKHKD KLKQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: