YRC Public Data Repository - Protein Structure Prediction

Protein:	RL1_DEIRA
Organism:	Deinococcus radiodurans
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL1_DEIRA.

Description	E-value	Query Range	Subject Range
RL1_THET2 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=... RL1_THETH - 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 gi\|2120598 - pir\|\|S66577 ribosomal protein L1 - Thermus aquaticus (fragment)	2.0E-77	[1..229]	[1..229]
gi\|116668234, gi... - gi\|211938913\|pdb\|2JL8\|C Chain C, Insights Into Translational Termination From The Structure Of Rf2 B... RL1_THET8 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV...	3.0E-77	[1..229]	[1..229]
RL1_MOOTA - 50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1	7.0E-77	[1..227]	[1..226]
RL1_STAEQ - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplA PE=3 SV=1 RL1_STAEP - (Q8CTT4) 50S ribosomal protein L1 gi\|242234648, gi... - gi\|242241870\|ref\|ZP_04796315.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis W23144], gi\|242... gi\|251809955, gi... - gi\|251809955\|ref\|ZP_04824428.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis BCM-HMP0060], g... RL1_STAES - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplA PE=3 SV=1	2.0E-76	[1..232]	[1..231]
RL1_STAAR - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MRSA252) GN=rplA PE=3 SV=1 gi\|227557414, gi... - gi\|227557414\|ref\|ZP_03987461.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus MN8], ...	2.0E-76	[1..230]	[1..229]
gi\|28373722 - gi\|28373722\|pdb\|1ML5\|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release... RL1_THETH - (P27150) 50S ribosomal protein L1 RL1_THET2 - (Q72GV9) 50S ribosomal protein L1 gi\|66361019\|pdb\|... - Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	2.0E-76	[2..229]	[1..228]
RL1_CHESB - 50S ribosomal protein L1 OS=Chelativorans sp. (strain BNC1) GN=rplA PE=3 SV=1	1.0E-75	[1..233]	[1..232]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	1.0E-75	[3..230]	[2..228]
RL1_STAAS - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MSSA476) GN=rplA PE=3 SV=1 RL1_STAAB - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplA PE=3 SV=1 RL1_STAAE - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Newman) GN=rplA PE=3 SV=1 RL1_STAA2 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH1) GN=rplA PE=3 SV=1 RL1_STAAT - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplA PE=3 SV=1 RL1_STAA9 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH9) GN=rplA PE=3 SV=1 gi\|269202161\|ref... - 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus ED98] RL1_STAA8 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplA PE=3 SV=1 RL1_STAA3 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain USA300) GN=rplA PE=3 SV=1 RL1_STAA1 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplA PE=3 SV=1 gi\|227852234, gi... - gi\|227899471\|ref\|ZP_04017276.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH60]... gi\|251802989, gi... - gi\|251813487\|ref\|ZP_04827960.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH70]... gi\|253315648 - gi\|253315648\|ref\|ZP_04838861.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. C... gi\|87128269\|gb\|A... - ribosomal protein L1 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L1 [Staphylococ... gi\|253731143, gi... - gi\|253731143\|ref\|ZP_04865308.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus USA300... gi\|221139611 - gi\|221139611\|ref\|ZP_03564410.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. J... gi\|253732546, gi... - gi\|253732546\|ref\|ZP_04866711.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH130... gi\|221141025 - gi\|221141025\|ref\|ZP_03565518.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. J... gi\|255005332 - gi\|255005332\|ref\|ZP_05143933.2\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus Mu50-o... RL1_STAAW - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MW2) GN=rplA PE=3 SV=1 RL1_STAAM - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplA PE=3 SV=1 RL1_STAAC - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain COL) GN=rplA PE=3 SV=1	1.0E-75	[1..230]	[1..229]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHGKRYRA LEGKVDRNKQ YSIDEAAALV KELATAKFDE TVEVHFRLGI DPRKSDQNVR  60
   61 GTVALPHGTG RSVRVAVITK GENVQAAEAA GADVVGSDEL IERIAGGFMD FDAVVATPDM 120
  121 MAQIGQKLAR LLGPRGLLPN PKSGTVGADV AGMVRGLKAG RIEFRNDKTG VVHAPIGKAS 180
  181 FESGNLSANY QALISALEGA KPGTAKGVFL RSAYLTTTMG PSIPLALGGA ALA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	1eg0N
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.98821526471491	bayes_pls_golite062009
structural molecule activity	9.4110731269774	bayes_pls_golite062009
binding	1.37133122073906	bayes_pls_golite062009
protein binding	0.335149649581279	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: