YRC Public Data Repository - Protein Structure Prediction

Protein:	RL19_GEOSE
Organism:	Geobacillus stearothermophilus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_GEOSE.

Description	E-value	Query Range	Subject Range
RL19_VIBCM - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplS PE=3 SV=1 gi\|75814057, gi\|... - gi\|75814057\|ref\|ZP_00744708.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae V52], gi\|121730267\|re... gi\|229355920, gi... - gi\|229507175\|ref\|ZP_04396681.1\| LSU ribosomal protein L19p [Vibrio cholerae BX 330286], gi\|229355920... gi\|229509160, gi... - gi\|229509160\|ref\|ZP_04398645.1\| LSU ribosomal protein L19p [Vibrio cholerae B33], gi\|229353732\|gb\|EE... gi\|229512833, gi... - gi\|229512833\|ref\|ZP_04402300.1\| LSU ribosomal protein L19p [Vibrio cholerae TMA 21], gi\|229350082\|gb... gi\|229519630, gi... - gi\|229519630\|ref\|ZP_04409073.1\| LSU ribosomal protein L19p [Vibrio cholerae RC9], gi\|229344319\|gb\|EE... gi\|229520860, gi... - gi\|229520860\|ref\|ZP_04410282.1\| LSU ribosomal protein L19p [Vibrio cholerae TM 11079-80], gi\|2293420... gi\|197750586, gi... - gi\|254292063\|ref\|ZP_04962839.1\| ribosomal protein L19 [Vibrio cholerae AM-19226], gi\|197750586\|ref\|Y... gi\|229338805, gi... - gi\|229525224\|ref\|ZP_04414629.1\| LSU ribosomal protein L19p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|148874301, gi... - gi\|153830241\|ref\|ZP_01982908.1\| ribosomal protein L19 [Vibrio cholerae 623-39], gi\|148874301\|gb\|EDL7... gi\|229530377, gi... - gi\|229530377\|ref\|ZP_04419765.1\| LSU ribosomal protein L19p [Vibrio cholerae 12129(1)], gi\|229332150\|... gi\|229368802, gi... - gi\|229606147\|ref\|YP_002876795.1\| LSU ribosomal protein L19p [Vibrio cholerae MJ-1236], gi\|229368802\|... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae GN=rplS PE=3 SV=3 gi\|153216310, gi... - gi\|153216310\|ref\|ZP_01950400.1\| ribosomal protein L19 [Vibrio cholerae 1587], gi\|124114352\|gb\|EAY331... gi\|124117868, gi... - gi\|153224048\|ref\|ZP_01954193.1\| ribosomal protein L19 [Vibrio cholerae MAK 757], gi\|124117868\|gb\|EAY... gi\|124120841, gi... - gi\|153803623\|ref\|ZP_01958209.1\| ribosomal protein L19 [Vibrio cholerae MZO-3], gi\|124120841\|gb\|EAY39... gi\|153820582, gi... - gi\|153820582\|ref\|ZP_01973249.1\| ribosomal protein L19 [Vibrio cholerae NCTC 8457], gi\|126508874\|gb\|E... gi\|153827343, gi... - gi\|153827343\|ref\|ZP_01980010.1\| ribosomal protein L19 [Vibrio cholerae MZO-2], gi\|149738738\|gb\|EDM53... RL19_VIBC3 - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|75828608, gi\|... - gi\|75828608\|ref\|ZP_00757979.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae MO10], gi\|254850801\|r...	182.0	[0..1]	[116..1]
gi\|87282734, gi\|... - gi\|87302851\|ref\|ZP_01085662.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi\|87282734\|gb...	182.0	[0..2]	[116..57]
gi\|84394293, gi\|... - gi\|84394293\|ref\|ZP_00993018.1\| 50S ribosomal protein L19 [Vibrio splendidus 12B01], gi\|84375096\|gb\|E...	178.0	[0..1]	[116..1]
RL19_VIBCB - 50S ribosomal protein L19 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplS PE=3 SV=1 gi\|91228776, gi\|... - gi\|91228776\|ref\|ZP_01262686.1\| 50S ribosomal protein L19 [Vibrio alginolyticus 12G01], gi\|91187683\|g... gi\|148865851, gi... - gi\|153835827\|ref\|ZP_01988494.1\| ribosomal protein L19 [Vibrio harveyi HY01], gi\|148865851\|gb\|EDL6681... gi\|116183751, gi... - gi\|75854260\|ref\|ZP_00761965.1\| COG0335: Ribosomal protein L19 [Vibrio sp. Ex25], gi\|116183751\|ref\|ZP...	178.0	[0..1]	[116..1]
RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida GN=rplS PE=3 SV=2 RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida (strain Pm70) GN=rplS PE=3 SV=2	177.0	[0..1]	[115..1]
RL19_VIBVY - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain YJ016) GN=rplS PE=3 SV=1 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain CMCP6) GN=rplS PE=3 SV=3 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus GN=rplS PE=3 SV=3	177.0	[0..1]	[116..1]
RL19_MANSM - 50S ribosomal protein L19 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplS PE=3 SV=1	177.0	[0..1]	[115..1]
gi\|86168341, gi\|... - gi\|87123772\|ref\|ZP_01079622.1\| ribosomal protein L19 [Synechococcus sp. RS9917], gi\|86168341\|gb\|EAQ6...	177.0	[0..4]	[116..57]
EG10880 - 50S ribosomal subunit protein L19 / 50S ribosomal subunit protein L19 gi\|12517028, gi\|... - gi\|15803128\|ref\|NP_289159.1\| 50S ribosomal protein L19 [Escherichia coli O157:H7 EDL933], gi\|1251702... EG10880 - 50S ribosomal subunit protein L19 / 50S ribosomal subunit protein L19 sp\|B7UH55\|RL19_ECO27 - 50S ribosomal protein L19 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplS PE=3 SV=1 gi\|124500897, gi... - gi\|124528005\|ref\|ZP_01699358.1\| ribosomal protein L19 [Escherichia coli B], gi\|124500897\|gb\|EAY48365... RL19_ECO5E - 50S ribosomal protein L19 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplS PE=3 SV=1 gi\|208740818, gi... - gi\|208820695\|ref\|ZP_03261015.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4042], gi\|208... RL19_ECO27 - 50S ribosomal protein L19 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplS PE=3 SV=1 gi\|1800011, gi\|8... - gi\|89109407\|ref\|AP_003187.1\| 50S ribosomal subunit protein L19 [Escherichia coli str. K-12 substr. W... RL19_ECOSE - 50S ribosomal protein L19 OS=Escherichia coli (strain SE11) GN=rplS PE=3 SV=1 RL19_ESCF3 - 50S ribosomal protein L19 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN... gi\|217326675, gi... - gi\|217326675\|ref\|ZP_03442758.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. TW14588], gi\|21... RL19_ECO45 - 50S ribosomal protein L19 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplS PE=3 SV=1 RL19_ECO8A - 50S ribosomal protein L19 OS=Escherichia coli O8 (strain IAI1) GN=rplS PE=3 SV=1 gi\|189370859, gi... - gi\|189370859\|gb\|EDU89275.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC869], gi\|16878950... gi\|189003334, gi... - gi\|189003334\|gb\|EDU72320.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4076], gi\|1687785... RL19_ECODH - 50S ribosomal protein L19 OS=Escherichia coli (strain K12 / DH10B) GN=rplS PE=3 SV=1 gi\|168801723, gi... - gi\|189376169\|gb\|EDU94585.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC508], gi\|16880172... RL19_ECOUT - 50S ribosomal protein L19 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplS PE=3 SV=1 gi\|195940200 - gi\|195940200\|ref\|ZP_03085582.1\| 50S ribosomal protein L19 [Escherichia coli O157:H7 str. EC4024] gi\|13362940, gi\|... - gi\|15832723\|ref\|NP_311496.1\| 50S ribosomal protein L19 [Escherichia coli O157:H7 str. Sakai], gi\|133... RL19_ECOSM - 50S ribosomal protein L19 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplS PE=3 SV=1 RL19_ECOL5 - 50S ribosomal protein L19 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplS PE=3 SV=1 gi\|208813089, gi... - gi\|208813089\|ref\|ZP_03254418.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4045], gi\|208... RL19_SHIF8 - 50S ribosomal protein L19 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplS PE=3 SV=1 gi\|208807923, gi... - gi\|208807923\|ref\|ZP_03250260.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4206], gi\|208... RL19_ECO55 - 50S ribosomal protein L19 OS=Escherichia coli (strain 55989 / EAEC) GN=rplS PE=3 SV=1 RL19_ECO81 - 50S ribosomal protein L19 OS=Escherichia coli O81 (strain ED1a) GN=rplS PE=3 SV=1 RL19_ECOLU - 50S ribosomal protein L19 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplS PE=3 SV=1 RL19_ECO7I - 50S ribosomal protein L19 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplS PE=3 SV=1 gi\|254037682, gi... - gi\|254037682\|ref\|ZP_04871740.1\| ribosomal protein L19 [Escherichia sp. 1_1_43], gi\|226839306\|gb\|EEH7... gi\|253974477, gi... - gi\|254162576\|ref\|YP_003045684.1\| 50S ribosomal protein L19 [Escherichia coli B str. REL606], gi\|2539... gi\|254794552, gi... - gi\|254794552\|ref\|YP_003079389.1\| 50S ribosomal subunit protein L19 [Escherichia coli O157:H7 str. TW... RL19_SHISS - 50S ribosomal protein L19 OS=Shigella sonnei (strain Ss046) GN=rplS PE=3 SV=1 RL19_ECOL6 - 50S ribosomal protein L19 OS=Escherichia coli O6 GN=rplS PE=3 SV=2 gi\|193064092, gi... - gi\|75258025\|ref\|ZP_00729499.1\| COG0335: Ribosomal protein L19 [Escherichia coli E22], gi\|193064092\|r... gi\|188495785, gi... - gi\|75513212\|ref\|ZP_00735654.1\| COG0335: Ribosomal protein L19 [Escherichia coli 53638], gi\|188495785... RL19_SHIDS - 50S ribosomal protein L19 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplS PE=3 SV=1 RL19_SHIBS - 50S ribosomal protein L19 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplS PE=3 SV=1 RL19_ECO24 - 50S ribosomal protein L19 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplS PE=3 SV=1 RL19_ECOHS - 50S ribosomal protein L19 OS=Escherichia coli O9:H4 (strain HS) GN=rplS PE=3 SV=1 gi\|194439336, gi... - gi\|83585226\|ref\|ZP_00923875.1\| COG0335: Ribosomal protein L19 [Escherichia coli 101-1], gi\|194439336... RL19_SHIB3 - 50S ribosomal protein L19 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplS PE=3 S... gi\|191169053, gi... - gi\|75227663\|ref\|ZP_00714404.1\| COG0335: Ribosomal protein L19 [Escherichia coli B7A], gi\|191169053\|r... gi\|168758675, gi... - gi\|189354546\|gb\|EDU72965.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4401], gi\|1687586... gi\|190905145, gi... - gi\|75236028\|ref\|ZP_00720162.1\| COG0335: Ribosomal protein L19 [Escherichia coli F11], gi\|191174572\|r... gi\|188014002, gi... - gi\|188014002\|gb\|EDU52124.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4113], gi\|1687520... gi\|194430170, gi... - gi\|75208560\|ref\|ZP_00708873.1\| COG0335: Ribosomal protein L19 [Escherichia coli B171], gi\|194430170\|... gi\|187770626, gi... - gi\|187770626\|gb\|EDU34470.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4196], gi\|1687734... gi\|192954986, gi... - gi\|75214704\|ref\|ZP_00713212.1\| COG0335: Ribosomal protein L19 [Escherichia coli E110019], gi\|1930716... gi\|168762398, gi... - gi\|189367258\|gb\|EDU85674.1\| ribosomal protein L19 [Escherichia coli O157:H7 str. EC4501], gi\|1687623... RL19_ECOK1 - 50S ribosomal protein L19 OS=Escherichia coli O1:K1 / APEC GN=rplS PE=3 SV=1 RL19_ECOLI - 50S ribosomal protein L19 - Escherichia coli RL19_SHIFL - 50S ribosomal protein L19 OS=Shigella flexneri GN=rplS PE=3 SV=2 RL19_ECOL6 - 50S ribosomal protein L19 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rplS PE=... gi\|24053051, gi\|... - gi\|24113944\|ref\|NP_708454.1\| 50S ribosomal protein L19 [Shigella flexneri 2a str. 301], gi\|24053051\|... RL19_ECO57 - 50S ribosomal protein L19 OS=Escherichia coli O157:H7 GN=rplS PE=3 SV=2 RL19_ECOLC - 50S ribosomal protein L19 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplS PE=3 SV... gi\|30064005, gi\|... - gi\|30064005\|ref\|NP_838176.1\| 50S ribosomal protein L19 [Shigella flexneri 2a str. 2457T], gi\|3004226... gi\|227834812, gi... - gi\|227888172\|ref\|ZP_04005977.1\| 50S ribosomal protein L19 [Escherichia coli 83972], gi\|227834812\|gb\|... gi\|226899846, gi... - gi\|237706806\|ref\|ZP_04537287.1\| ribosomal protein L19 [Escherichia sp. 3_2_53FAA], gi\|226899846\|gb\|E... RL19_ECOBW - 50S ribosomal protein L19 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rplS PE=3 SV=1 gi\|251785928, gi... - gi\|251785928\|ref\|YP_003000232.1\| hypothetical protein B21_02459 [Escherichia coli BL21], gi\|24237820... gi\|254289337, gi... - gi\|254289337\|ref\|YP_003055085.1\| 50S ribosomal protein L19 [Escherichia coli BL21(DE3)], gi\|25397864...	176.0	[0..1]	[114..1]
gi\|144983113, gi... - gi\|145641540\|ref\|ZP_01797118.1\| lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [Hae... gi\|145639740, gi... - gi\|145639740\|ref\|ZP_01795342.1\| 50S ribosomal protein L19 [Haemophilus influenzae PittII], gi\|145271... gi\|145637365, gi... - gi\|145637365\|ref\|ZP_01793025.1\| lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [Hae... gi\|145267110, gi... - gi\|145635637\|ref\|ZP_01791334.1\| lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [Hae... gi\|145633790, gi... - gi\|145633790\|ref\|ZP_01789514.1\| 50S ribosomal protein L19 [Haemophilus influenzae 3655], gi\|14498536... gi\|42629131 - gi\|42629131\|ref\|ZP_00154680.1\| COG0335: Ribosomal protein L19 [Haemophilus influenzae R2846] gi\|145641540, gi... - gi\|145641540\|ref\|ZP_01797118.1\| lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [Hae... gi\|42630504 - gi\|42630504\|ref\|ZP_00156043.1\| COG0335: Ribosomal protein L19 [Haemophilus influenzae R2866] gi\|145628508, gi... - gi\|145628508\|ref\|ZP_01784308.1\| lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [Hae... RL19_HAEIN - 50S ribosomal protein L19 OS=Haemophilus influenzae GN=rplS PE=3 SV=2 RL19_HAEI8 - 50S ribosomal protein L19 OS=Haemophilus influenzae (strain 86-028NP) GN=rplS PE=3 SV=1 RL19_HAEIN - 50S ribosomal protein L19 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RL19_HAEIG - 50S ribosomal protein L19 OS=Haemophilus influenzae (strain PittGG) GN=rplS PE=3 SV=1 RL19_HAEIE - 50S ribosomal protein L19 OS=Haemophilus influenzae (strain PittEE) GN=rplS PE=3 SV=1 gi\|229811904, gi... - gi\|229845193\|ref\|ZP_04465327.1\| 50S ribosomal protein L19 [Haemophilus influenzae 6P18H1], gi\|229811... gi\|229809702, gi... - gi\|229847376\|ref\|ZP_04467477.1\| 50S ribosomal protein L19 [Haemophilus influenzae 7P49H1], gi\|229809...	176.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHLIQEITK EQLRTDLPDF RPGDTVRVHV KVVEGNRERI QVFEGVVIKR RGAGISETFT  60
   61 VRKVSYGVGV ERTFPVHTPK IAKLEVIRRG KVRRAKLYYL RELRGKAARI KEKTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1vs6P
Description:	No description for 1vs6P was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
binding	1.06497983674709	bayes_pls_golite062009
nucleic acid binding	0.694156012779703	bayes_pls_golite062009
transcription regulator activity	0.531244221462633	bayes_pls_golite062009
protein binding	0.403456843184132	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009
DNA binding	0.119656223173058	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: