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View Structure Prediction Details

Protein: RL19_AGRFC
Organism: Agrobacterium tumefaciens str. C58
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_AGRFC.

Description E-value Query
Range		 Subject
Range
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...
RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1
 161.0 [0..3] [124..2]
gi|23014871 - gi|23014871|ref|ZP_00054667.1| COG0335: Ribosomal protein L19 [Magnetospirillum magnetotacticum MS-1...
 158.0 [0..1] [118..1]
RL19_NITHX - 50S ribosomal protein L19 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplS PE=3 SV=1
 158.0 [0..3] [125..2]
gi|23493773, gi|... - gi|25028488|ref|NP_738542.1| 50S ribosomal protein L19 [Corynebacterium efficiens YS-314], gi|234937...
 156.0 [0..10] [119..19]
RL19_MAGSA - 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 S...
 156.0 [0..1] [118..1]
RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti (strain 1021) GN=rplS PE=3 SV=1
RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1
 155.0 [0..3] [145..2]
RL19_NOCFA - 50S ribosomal protein L19 OS=Nocardia farcinica (strain IFM 10152) GN=rplS PE=3 SV=1
RL19_NOCFA - 50S ribosomal protein L19 OS=Nocardia farcinica GN=rplS PE=3 SV=1
 155.0 [0..8] [119..2]
RL19_NITWN - 50S ribosomal protein L19 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplS PE=3 SV=1
 155.0 [0..3] [125..2]
RL19_RHOP2 - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplS PE=3 SV=1
RL19_RHOPS - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplS PE=3 SV=1
 155.0 [0..3] [132..2]
rplS, L19 - rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297
RL19_RHOPT - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplS PE=3 SV=1
RL19_RHOPA - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris GN=rplS PE=1 SV=1
 155.0 [0..3] [130..2]

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Predicted Domain #1
Region A:
Residues: [1-179] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIIQQLEA EQAAKIEAKR TLPEFSPGDT LRVNVRVTEG NRTRVQAYEG VCIARSGGGL  60
   61 SESFTVRKIS YGEGVERVFP IYSPLVEGVE IVRRGKVRRA KLYYLRDRRG KAARIVENTG 120
  121 TRARKLNESE RQAAAEEKAR LEAEKVAAAQ ALAAEKAAAE AAEAKAAEEA AKAAEATAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
binding 1.06497983674709 bayes_pls_golite062009
nucleic acid binding 0.694156012779703 bayes_pls_golite062009
transcription regulator activity 0.531244221462633 bayes_pls_golite062009
protein binding 0.403456843184132 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
DNA binding 0.119656223173058 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle