YRC Public Data Repository - Protein Structure Prediction

Protein:	RL17_ECOLI
Organism:	Escherichia coli
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL17_ECOLI.

Description	E-value	Query Range	Subject Range
RL17_THICR - 50S ribosomal protein L17 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplQ PE=3 SV=1	195.0	[0..1]	[127..1]
RL17_PSEHT - 50S ribosomal protein L17 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplQ PE=3 SV=1	194.0	[0..1]	[127..1]
gi\|32034693 - gi\|32034693\|ref\|ZP_00134831.1\| COG0203: Ribosomal protein L17 [Actinobacillus pleuropneumoniae serov... RL17_ACTPJ - 50S ribosomal protein L17 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplQ PE=3 S... RL17_ACTP7 - 50S ribosomal protein L17 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplQ PE=3 S...	193.0	[0..1]	[127..1]
RL17_MANSM - 50S ribosomal protein L17 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplQ PE=3 SV=1	192.0	[0..1]	[127..1]
RL17_NITWN - 50S ribosomal protein L17 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplQ PE=3 SV=1	192.0	[0..1]	[124..1]
RL17_RHORT - 50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	192.0	[0..1]	[124..1]
RL17_CHRSD - 50S ribosomal protein L17 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	192.0	[0..1]	[127..1]
gi\|88816516, gi\|... - gi\|88861468\|ref\|ZP_01136094.1\| 50S ribosomal protein L17 [Pseudoalteromonas tunicata D2], gi\|8881651...	192.0	[0..1]	[127..1]
gi\|85698020, gi\|... - gi\|85715105\|ref\|ZP_01046089.1\| 50S ribosomal protein L17 [Nitrobacter sp. Nb-311A], gi\|85698020\|gb\|E...	191.0	[0..1]	[124..1]
RL17_CAUCN - 50S ribosomal protein L17 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplQ PE=3 SV=1 RL17_CAUCR - 50S ribosomal protein L17 OS=Caulobacter crescentus GN=rplQ PE=3 SV=1 RL17_CAUCR - 50S ribosomal protein L17 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplQ PE=3 SV=1	191.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHRKSGRQL NRNSSHRQAM FRNMAGSLVR HEIIKTTLPK AKELRRVVEP LITLAKTDSV  60
   61 ANRRLAFART RDNEIVAKLF NELGPRFASR AGGYTRILKC GFRAGDNAPM AYIELVDRSE 120
  121 KAEAAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1p85L
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.91574154879999	bayes_pls_golite062009
structural molecule activity	9.33953790706737	bayes_pls_golite062009
binding	1.23500675594838	bayes_pls_golite062009
protein binding	0.558431147696839	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: