YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_THEMA
Organism:	Thermotoga maritima
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_THEMA.

Description	E-value	Query Range	Subject Range
gi\|73535871, gi\|... - gi\|73535871\|pdb\|1ZAX\|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P212121, Form B,...	181.0	[0..1]	[179..2]
gi\|68245303, gi\|... - gi\|69260659\|ref\|ZP_00608127.1\| Ribosomal protein L10 [Magnetococcus sp. MC-1], gi\|68245303\|gb\|EAN274...	174.0	[0..2]	[178..1]
RK10_TOBAC - 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	173.0	[0..2]	[179..49]
gi\|48765753 - ref\|ZP_00270303.1\| COG0244: Ribosomal protein L10 [Rhodospirillum rubrum] RL10_RHORT - 50S ribosomal protein L10 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	170.0	[0..2]	[178..1]
gi\|114778901, gi... - gi\|114778901\|ref\|ZP_01453698.1\| 50S ribosomal protein L10 [Mariprofundus ferrooxydans PV-1], gi\|1145...	168.0	[0..2]	[178..1]
gi\|113875391, gi... - gi\|150396197\|ref\|YP_001326664.1\| 50S ribosomal protein L10 [Sinorhizobium medicae WSM419], gi\|150027...	165.0	[0..4]	[178..26]
gi\|27476079, gi\|... - gi\|50920575\|ref\|XP_470648.1\| Putative 50S ribosomal protein L10 [Oryza sativa (japonica cultivar-gro...	165.0	[0..2]	[179..41]
gi\|28394174 - gi\|28394174\|dbj\|BAC57017.1\| 50S ribosomal protein L10 [Selenomonas ruminantium]	165.0	[0..1]	[178..1]
RL10_GEOUR - 50S ribosomal protein L10 OS=Geobacter uraniireducens (strain Rf4) GN=rplJ PE=3 SV=1	165.0	[0..2]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRQQKELI VKEMSEIFKK TSLILFADFL GFTVADLTEL RSRLREKYGD GARFRVVKNT  60
   61 LLNLALKNAE YEGYEEFLKG PTAVLYVTEG DPVEAVKIIY NFYKDKKADL SRLKGGFLEG 120
  121 KKFTAEEVEN IAKLPSKEEL YAMLVGRVKA PITGLVFALS GILRNLVYVL NAIKEKKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: