YRC Public Data Repository - Protein Structure Prediction

Protein:	PTGB_ECOLI, PTGC...
Organism:	Escherichia coli
Length:	477 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTGB_ECOLI, PTGC....

Description	E-value	Query Range	Subject Range
gi\|255004986 - gi\|255004986\|ref\|ZP_05143587.2\| PTS enzyme II [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|269201840\|ref... - PTS system, IIABC components [Staphylococcus aureus subsp. aureus ED98] PTG3C_STAA2 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH1) GN=ptsG PE=3 SV=1 PTG3C_STAA9 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH9) GN=ptsG PE=3 SV=1 PTG3C_STAAN - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=ptsG PE=1 SV=... gi\|25287946 - pir\|\|A89781 hypothetical protein glcA [imported] - Staphylococcus aureus (strain N315) PTG3C_STAA1 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... PTG3C_STAAM - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN...	345.0	[0..1]	[477..1]
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	340.0	[0..1]	[476..1]
PTG3C_STAAC - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain COL) GN=ptsG PE=3 SV=1 PTG3C_STAAS - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MSSA476) GN=ptsG PE=3 ... PTG3C_STAA3 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300) GN=ptsG PE=3 S... PTG3C_STAAE - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Newman) GN=ptsG PE=3 S... gi\|87160101\|ref\|... - PTS system, glucose-specific IIBC component domain protein [Staphylococcus aureus subsp. aureus USA3... PTG3C_STAAW - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MW2) GN=ptsG PE=3 SV=1 PTG3C_STAAT - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=p... PTG3C_STAA8 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain NCTC 8325) GN=ptsG PE=...	338.0	[0..1]	[477..1]
PTG3C_STAAB - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) ...	338.0	[0..1]	[477..1]
gi\|68056384, gi\|... - gi\|68056384\|ref\|ZP_00540507.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	337.0	[0..1]	[476..1]
gi\|221138846 - gi\|221138846\|ref\|ZP_03563648.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... gi\|221140734 - gi\|221140734\|ref\|ZP_03565227.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... PTG3C_STAAR - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MRSA252) GN=ptsG PE=3 ...	337.0	[0..1]	[477..1]
PTG3C_STAES - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pt... PTG3C_STAEP - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis GN=ptsG PE=3 SV=1 PTG3C_STAEQ - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62...	337.0	[0..1]	[476..1]
gi\|15613407, gi\|... - gi\|15613407\|ref\|NP_241710.1\| PTS system, glucose-specific enzyme II, A component [Bacillus haloduran... gi\|25287942 - pir\|\|D83755 PTS system, glucose-specific enzyme II, A component BH0844 [imported] - Bacillus halodur...	333.0	[0..1]	[476..1]
PTG3C_STAHJ - PTS system glucose-specific EIICBA component OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pts...	331.0	[0..1]	[476..1]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	329.0	[0..1]	[476..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNAFANLQ KVGKSLMLPV SVLPIAGILL GVGSANFSWL PAVVSHVMAE AGGSVFANMP  60
   61 LIFAIGVALG FTNNDGVSAL AAVVAYGIMV KTMAVVAPLV LHLPAEEIAS KHLAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGVLGGIISG AIAAYMFNRF YRIKLPEYLG FFAGKRFVPI ISGLAAIFTG VVLSFIWPPI  60
   61 GSAIQTFSQW AAYQNPVVAF GIYGFIERCL VPFGLHHIWN VPFQMQIGEY TN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [228-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAGQVFHGDI PRYMAGDPTA GKLSGGFLFK MYGLPAAAIA IWHSAKPENR AKVGGIMISA  60
   61 ALTSFLTGIT EPIEFSFMFV APILYIIHAI LAGLAFPICI LLGMRDGTSF SHGLIDFIVL 120
  121 SGNSSKLWLF PIVGIGYAIV YYTIFRVLIK ALDLKTPGRE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [388-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DATEDAKATG TSEMAPALVA AFGGKENITN LDACITRLRV SVADVSKVDQ AGLKKLGAAG  60
   61 VVVAGSGVQA IFGTKSDNLK TEMDEYIRNH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	1ibaA
Description:	GLUCOSE PERMEASE (DOMAIN IIB), NMR, 11 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: