YRC Public Data Repository - Protein Structure Prediction

Protein:	OXAA_ECOLI
Organism:	Escherichia coli
Length:	548 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXAA_ECOLI.

Description	E-value	Query Range	Subject Range
YIDC_SALPA, OXAA... - Membrane protein insertase YidC OS=Salmonella paratyphi A GN=yidC PE=3 SV=1, Inner membrane protein ... YIDC_SALPK - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain AKU_12601) GN=yidC PE=3 SV=1 YIDC_SALPA - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yidC PE=3 S... YIDC_SALA4 - Membrane protein insertase YidC OS=Salmonella agona (strain SL483) GN=yidC PE=3 SV=1 gi\|194468665, gi... - gi\|194468665\|ref\|ZP_03074649.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|195632342, gi... - gi\|195632342\|gb\|EDX50826.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... gi\|205331641, gi... - gi\|205331641\|gb\|EDZ18405.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALPB - Membrane protein insertase YidC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yidC PE=3... gi\|238913094 - gi\|238913094\|ref\|ZP_04656931.1\| putative inner membrane protein translocase component YidC [Salmonel... OXAA_SALPB - Inner membrane protein oxaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=oxaA PE=3 SV=...	639.0	[0..1]	[548..1]
gi\|168260373, gi... - gi\|205350262\|gb\|EDZ36893.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... OXAA_SALTY - Inner membrane protein oxaA OS=Salmonella typhimurium GN=oxaA PE=3 SV=1 gi\|167548869, gi... - gi\|205325671\|gb\|EDZ13510.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALTY - Membrane protein insertase YidC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=y... gi\|200387745, gi... - gi\|200387745\|ref\|ZP_03214357.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|197243487, gi... - gi\|197265232\|ref\|ZP_03165306.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... OXAA_SALTY, YIDC... - Membrane protein insertase YidC OS=Salmonella typhimurium GN=yidC PE=3 SV=1, Inner membrane protein ... lcl\|NC_016856.1_... - [gene=yidC] [protein=putative inner membrane protein translocase component YidC] [protein_id=YP_0052...	638.0	[0..1]	[548..1]
gi\|192957453, gi... - gi\|75236428\|ref\|ZP_00720524.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli E11001...	636.0	[0..1]	[548..1]
YIDC_SALCH - Membrane protein insertase YidC OS=Salmonella choleraesuis (strain SC-B67) GN=yidC PE=3 SV=1 OXAA_SALCH - Inner membrane protein oxaA OS=Salmonella choleraesuis GN=oxaA PE=3 SV=1 OXAA_SALCH, YIDC... - Membrane protein insertase YidC OS=Salmonella choleraesuis GN=yidC PE=3 SV=1, Inner membrane protein...	633.0	[0..1]	[548..1]
YIDC_SHIFL - Membrane protein insertase YidC OS=Shigella flexneri GN=yidC PE=3 SV=1 gi\|56480409, gi\|... - gi\|56480409\|ref\|NP_709495.2\| putative inner membrane protein translocase component YidC [Shigella fl...	633.0	[0..1]	[548..1]
YIDC_ECOUT - Membrane protein insertase YidC OS=Escherichia coli (strain UTI89 / UPEC) GN=yidC PE=1 SV=1 gi\|13364115, gi\|... - gi\|15833894\|ref\|NP_312667.1\| putative inner membrane protein translocase component YidC [Escherichia... YIDC_ECO57 - Membrane protein insertase YidC OS=Escherichia coli O157:H7 GN=yidC PE=3 SV=1 gi\|217321710, gi... - gi\|217325489\|ref\|ZP_03441573.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. TW14588],... OXAA_ECOL6, YIDC... - Membrane protein insertase YidC OS=Escherichia coli O6 GN=yidC PE=3 SV=1, Inner membrane protein oxa... YIDC_ECO8A - Membrane protein insertase YidC OS=Escherichia coli O8 (strain IAI1) GN=yidC PE=3 SV=1 YIDC_ECO45 - Membrane protein insertase YidC OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yidC PE=3 SV=1 YIDC_ECO81 - Membrane protein insertase YidC OS=Escherichia coli O81 (strain ED1a) GN=yidC PE=3 SV=1 YIDC_ECOL5 - Membrane protein insertase YidC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yidC PE=3 SV=1 YIDC_ECO55 - Membrane protein insertase YidC OS=Escherichia coli (strain 55989 / EAEC) GN=yidC PE=3 SV=1 YIDC_ECO7I - Membrane protein insertase YidC OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yidC PE=3 SV=1 YIDC_ECOLC - Membrane protein insertase YidC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yidC P... YIDC_ECOLU - Membrane protein insertase YidC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yidC PE=3... gi\|209754080, gi... - pir\|\|H91208 60 KD inner-membrane protein [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|12518544, gi\|... - gi\|15804299\|ref\|NP_290338.1\| putative inner membrane protein translocase component YidC [Escherichia... YIDC_ECOL6 - Membrane protein insertase YidC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yi... YIDC_SHISS - Membrane protein insertase YidC OS=Shigella sonnei (strain Ss046) GN=yidC PE=3 SV=1 YIDC_ECOHS - Membrane protein insertase YidC OS=Escherichia coli O9:H4 (strain HS) GN=yidC PE=3 SV=1 gi\|191170354, gi... - gi\|75242506\|ref\|ZP_00726250.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli F11], ... YIDC_ECOSM - Membrane protein insertase YidC OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yidC PE=3 SV=1 gi\|195936328 - gi\|195936328\|ref\|ZP_03081710.1\| putative inner membrane protein translocase component YidC [Escheric... YIDC_ECOK1 - Membrane protein insertase YidC OS=Escherichia coli O1:K1 / APEC GN=yidC PE=3 SV=1 gi\|208806756, gi... - gi\|208806756\|ref\|ZP_03249093.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4206], ... gi\|124530080, gi... - gi\|124530080\|ref\|ZP_01700863.1\| 60 kDa inner membrane insertion protein [Escherichia coli B], gi\|124... gi\|208813372, gi... - gi\|208813372\|ref\|ZP_03254701.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4045], ... gi\|208818916, gi... - gi\|208818916\|ref\|ZP_03259236.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4042], ... YIDC_ECO5E - Membrane protein insertase YidC OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yidC PE=3 SV=1 gi\|254795708, gi... - gi\|254795708\|ref\|YP_003080545.1\| cytoplasmic insertase into membrane protein, Sec system [Escherichi... YIDC_ECOSE - Membrane protein insertase YidC OS=Escherichia coli (strain SE11) GN=yidC PE=3 SV=1 gi\|226902771, gi... - gi\|237703507\|ref\|ZP_04533988.1\| inner-membrane protein [Escherichia sp. 3_2_53FAA], gi\|226902771\|gb\|... YIDC_ECO27 - Membrane protein insertase YidC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yidC PE=3 SV... gi\|227839206, gi... - gi\|227883928\|ref\|ZP_04001733.1\| Oxa1 family cytochrome oxidase biogenesis protein [Escherichia coli ... sp\|B7UMH2\|OXAA_ECO27 - Inner membrane protein oxaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=oxaA PE=3 SV=1 gi\|168748575, gi... - gi\|188016887\|gb\|EDU55009.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|168753598, gi... - gi\|189359277\|gb\|EDU77696.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|189369628, gi... - gi\|189369628\|gb\|EDU88044.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|189364371, gi... - gi\|189364371\|gb\|EDU82790.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168772256, gi... - gi\|187771700\|gb\|EDU35544.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|189002654, gi... - gi\|189002654\|gb\|EDU71640.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|189373378, gi... - gi\|189373378\|gb\|EDU91794.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|168798744, gi... - gi\|189378759\|gb\|EDU97175.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC508], gi\|16...	633.0	[0..1]	[548..1]
YIDC_ECO24 - Membrane protein insertase YidC OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yidC PE=3 SV...	633.0	[0..1]	[548..1]
gi\|194431207, gi... - gi\|83571503\|ref\|ZP_00922943.1\| COG0706: Preprotein translocase subunit YidC [Shigella dysenteriae 10...	633.0	[0..1]	[548..1]
gi\|30065013, gi\|... - gi\|30065013\|ref\|NP_839184.1\| putative inner membrane protein translocase component YidC [Shigella fl...	633.0	[0..1]	[548..1]
gi\|194413884, gi... - gi\|75210684\|ref\|ZP_00710825.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli B171],...	632.0	[0..1]	[548..1]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQRNLLVI ALLFVSFMIW QAWEQDKNPQ PQAQQTTQTT TTAAGSAADQ GVPASGQGKL  60
   61 ISVKTDVLDL TINTRGGDVE QALLPAYPKE LNSTQPFQLL ETSPQFIYQA QSGLTGRDGP 120
  121 DNPANGPRPL YNVEKDAYVL AEGQNELQVP MTYTDAAGNT FTKTFVLKRG DYAVNVNYNV 180
  181 QNAGEKPLEI SSFGQLKQSI TLPPHLDTGS SNFALHTFRG AAYSTPDEKY EKYKFDTIAD 240
  241 NENLNISSKG GWVAMLQQYF ATAWIPHNDG TNNFYTANLG NGIAAIGYKS QPVLVQPGQT 300
  301 GAMNSTLWV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.976
Match:	1jovA
Description:	Hypothetical protein HI1317
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.960387958208221	bayes_pls_golite062009
protein binding	0.351159898162977	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [310-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPEIQDKMAA VAPHLDLTVD YGWLWFISQP LFKLLKWIHS FV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [352-548]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNWGFSIIII TFIVRGIMYP LTKAQYTSMA KMRMLQPKIQ AMRERLGDDK QRISQEMMAL  60
   61 YKAEKVNPLG GCFPLLIQMP IFLALYYMLM GSVELRQAPF ALWIHDLSAQ DPYYILPILM 120
  121 GVTMFFIQKM SPTTVTDPMQ QKIMTFMPVI FTVFFLWFPS GLVLYYIVSN LVTIIQQQLI 180
  181 YRGLEKRGLH SREKKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	123.958607
Match:	PF02096.11
Description:	No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: