YRC Public Data Repository - Protein Structure Prediction

Protein:	NRDG_ECOLI
Organism:	Escherichia coli
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRDG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157163711, gi... - gi\|75198088\|ref\|ZP_00708158.1\| COG0602: Organic radical activating enzymes [Escherichia coli HS], gi... gi\|30065476, gi\|... - gi\|30065476\|ref\|NP_839647.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexner... gi\|110808021, gi... - gi\|110808021\|ref\|YP_691541.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexne... gi\|218697987, gi... - gi\|218697987\|ref\|YP_002405654.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|218434943, gi... - gi\|218707846\|ref\|YP_002415365.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|74314714, gi\|... - gi\|74314714\|ref\|YP_313133.1\| anaerobic ribonucleotide reductase-activating protein [Shigella sonnei ... gi\|24115454, gi\|... - gi\|24115454\|ref\|NP_709964.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexner...	152.0	[0..1]	[154..1]
gi\|50119333, gi\|... - gi\|50119333\|ref\|YP_048500.1\| anaerobic ribonucleotide reductase-activating protein [Pectobacterium a...	151.0	[0..1]	[154..1]
gi\|169756680, gi... - gi\|170021752\|ref\|YP_001726706.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|124500741, gi... - gi\|124528299\|ref\|ZP_01699623.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|218368166, gi... - gi\|218561397\|ref\|YP_002394310.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|192956892, gi... - gi\|75235454\|ref\|ZP_00719662.1\| COG0602: Organic radical activating enzymes [Escherichia coli E110019... gi\|190902719, gi... - gi\|75229608\|ref\|ZP_00716147.1\| COG0602: Organic radical activating enzymes [Escherichia coli B7A], g... gi\|83586734, gi\|... - gi\|83586734\|ref\|ZP_00925366.1\| COG0602: Organic radical activating enzymes [Escherichia coli 101-1],...	150.0	[0..1]	[154..1]
gi\|205274967, gi... - gi\|205355186\|ref\|YP_002228987.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella e... gi\|207859578, gi... - gi\|207859578\|ref\|YP_002246229.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella e... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium GN=nrdG... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium GN=nrdG... gi\|205330313, gi... - gi\|205330313\|gb\|EDZ17077.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Salm... gi\|238910607 - gi\|238910607\|ref\|ZP_04654444.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella en... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium (strain... lcl\|NC_016856.1_... - [gene=nrdG] [protein=anaerobic ribonucleotide reductase-activating protein] [protein_id=YP_005240772...	150.0	[0..1]	[154..1]
NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae serotype O1 (s... gi\|153825853, gi... - gi\|153825853\|ref\|ZP_01978520.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|254845380, gi... - gi\|75830585\|ref\|ZP_00759860.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae MO10], g... gi\|116216435, gi... - gi\|75823225\|ref\|ZP_00752743.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae RC385], ... gi\|121726072, gi... - gi\|75816710\|ref\|ZP_00747172.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V52], gi... gi\|121549301, gi... - gi\|121586476\|ref\|ZP_01676263.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|153220897, gi... - gi\|153220897\|ref\|ZP_01951979.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|227011224, gi... - gi\|227812082\|ref\|YP_002812092.1\| anaerobic ribonucleoside-triphosphate reductase activating protein ... NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae GN=nrdG PE=3 S... gi\|153819577, gi... - gi\|153819577\|ref\|ZP_01972244.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|229356667, gi... - gi\|229506316\|ref\|ZP_04395825.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229509564, gi... - gi\|229509564\|ref\|ZP_04399046.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229346496, gi... - gi\|229516615\|ref\|ZP_04406062.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229523014, gi... - gi\|229523014\|ref\|ZP_04412426.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229605867, gi... - gi\|229605867\|ref\|YP_002876571.1\| ribonucleotide reductase of class III (anaerobic) activating protei...	150.0	[0..1]	[153..1]
gi\|227015435, gi... - gi\|75825338\|ref\|ZP_00754774.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae O395], g...	150.0	[0..1]	[153..1]
gi\|37201096, gi\|... - gi\|37676554\|ref\|NP_936950.1\| organic radical activating enzyme [Vibrio vulnificus YJ016], gi\|3720109...	150.0	[0..1]	[154..16]
gi\|192930703, gi... - gi\|193063716\|ref\|ZP_03044804.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|194426527, gi... - gi\|75212208\|ref\|ZP_00712248.1\| COG0602: Organic radical activating enzymes [Escherichia coli B171], ...	150.0	[0..1]	[154..1]
gi\|89075722, gi\|... - gi\|89075722\|ref\|ZP_01162117.1\| putative anaerobic ribonucleoside-triphosphate reductase activating p...	150.0	[0..1]	[153..1]
gi\|26251143, gi\|... - gi\|26251143\|ref\|NP_757183.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia coli...	150.0	[0..1]	[154..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYHQYYPVD IVNGPGTRCT LFVSGCVHEC PGCYNKSTWR VNSGQPFTKA MEDQIINDLN  60
   61 DTRIKRQGIS LSGGDPLHPQ NVPDILKLVQ RIRAECPGKD IWVWTGYKLD ELNAAQMQVV 120
  121 DLINVLVDGK FVQDLKDPSL IWRGSSNQVV HHLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.045757
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48331922124015	bayes_pls_golite062009
binding	0.237364440524786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: