YRC Public Data Repository - Protein Structure Prediction

Protein:	NIRD_ECOLI
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIRD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|49531025, gi\|... - gi\|50085049\|ref\|YP_046559.1\| putative nitrate reductase (electron transfer subunit) and putative nit...	117.0	[0..2]	[106..13]
gi\|48855077 - gi\|48855077\|ref\|ZP_00309237.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|110637736, gi... - gi\|110637736\|ref\|YP_677943.1\| assimilatory nitrite reductase (NAD(P)H) small subunit [Cytophaga hutc...	113.0	[0..4]	[106..13]
gi\|54309686, gi\|... - gi\|54309686\|ref\|YP_130706.1\| putative nitrite reductase NADPH [Photobacterium profundum SS9], gi\|469...	112.0	[0..1]	[107..1]
gi\|73538686, gi\|... - gi\|73538686\|ref\|YP_299053.1\| assimilatory nitrite reductase (NAD(P)H) small subunit [Ralstonia eutro...	111.0	[0..2]	[108..8]
gi\|90326872, gi\|... - gi\|90412148\|ref\|ZP_01220154.1\| putative nitrite reductase NADPH [Photobacterium profundum 3TCK], gi\|...	111.0	[0..1]	[107..1]
gi\|91708661, gi\|... - gi\|91774674\|ref\|YP_544430.1\| nitrite reductase (NAD(P)H) large subunit, NirD [Methylobacillus flagel...	110.0	[0..3]	[108..26]
gi\|94501153, gi\|... - gi\|94501153\|ref\|ZP_01307676.1\| nitrite reductase small subunit [Oceanobacter sp. RED65], gi\|94426729...	110.0	[0..1]	[108..1]
gi\|77958281 - gi\|77958281\|ref\|ZP_00822317.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat...	110.0	[0..1]	[108..1]
gi\|87286122, gi\|... - gi\|87311214\|ref\|ZP_01093337.1\| nitrite reductase (NAD(P)H) large subunit [Blastopirellula marina DSM...	110.0	[0..1]	[107..862]
gi\|229706427, gi... - gi\|229836359\|ref\|ZP_04456526.1\| nitrite reductase [NAD [Yersinia pestis Pestoides A], gi\|229706427\|g... gi\|229840017, gi... - gi\|229840017\|ref\|ZP_04460176.1\| nitrite reductase [NAD [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229842098, gi... - gi\|229842098\|ref\|ZP_04462253.1\| nitrite reductase [NAD [Yersinia pestis biovar Orientalis str. India... gi\|162354005, gi... - gi\|77634601\|ref\|ZP_00796698.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|153947069, gi... - gi\|77631141\|ref\|ZP_00793727.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|21960945, gi\|... - gi\|22127814\|ref\|NP_671237.1\| nitrite reductase small subunit [Yersinia pestis KIM], gi\|21960945\|gb\|A... gi\|186700256, gi... - gi\|186897230\|ref\|YP_001874342.1\| nitrite reductase small subunit [Yersinia pseudotuberculosis PB1/+]... gi\|25358105 - pir\|\|AE0020 nitrite reductase [NAD(P)H] (EC 1.7.1.4) [imported] - Yersinia pestis (strain CO92) gi\|169749029, gi... - gi\|170022495\|ref\|YP_001719000.1\| nitrite reductase small subunit [Yersinia pseudotuberculosis YPIII]... gi\|51598031, gi\|... - gi\|51598031\|ref\|YP_072222.1\| nitrite reductase small subunit [Yersinia pseudotuberculosis IP 32953],... gi\|45440024, gi\|... - gi\|45440024\|ref\|NP_991563.1\| nitrite reductase small subunit [Yersinia pestis biovar Microtus str. 9... gi\|218927371, gi... - gi\|218927371\|ref\|YP_002345246.1\| nitrite reductase small subunit [Yersinia pestis CO92], gi\|16120503... Q664M8\|Q664M8_YERPS - Nitrite reductase [NAD] - Yersinia pseudotuberculosis gi\|165919993, gi... - gi\|165928044\|ref\|ZP_02223876.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar O... gi\|166205653, gi... - gi\|166213355\|ref\|ZP_02239390.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar A... gi\|166010525, gi... - gi\|166010525\|ref\|ZP_02231423.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar A... gi\|150260842, gi... - gi\|150260842\|ref\|ZP_01917570.1\| nitrite reductase [NAD [Yersinia pestis CA88-4125], gi\|149290250\|gb\|... gi\|167418944, gi... - gi\|167418944\|ref\|ZP_02310697.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar O... gi\|145597410, gi... - gi\|145597410\|ref\|YP_001161485.1\| nitrite reductase small subunit [Yersinia pestis Pestoides F], gi\|1... gi\|167052203, gi... - gi\|167399699\|ref\|ZP_02305223.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar A... gi\|167468233 - gi\|167468233\|ref\|ZP_02332937.1\| nitrite reductase [Yersinia pestis FV-1] gi\|167425706, gi... - gi\|167425706\|ref\|ZP_02317459.1\| nitrite reductase [NAD(P)H], small subunit [Yersinia pestis biovar M... gi\|165936288, gi... - gi\|89105791\|ref\|ZP_01178304.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|108809300, gi... - gi\|108809300\|ref\|YP_653216.1\| nitrite reductase small subunit [Yersinia pestis Antiqua], gi\|10878121... gi\|108814064, gi... - gi\|229904600\|ref\|ZP_04519711.1\| nitrite reductase [NAD [Yersinia pestis Nepal516], gi\|229678718\|gb\|E...	109.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQWKDICKI DDILPETGVC ALLGDEQVAI FRPYHSDQVF AISNIDPFFE SSVLSRGLIA  60
   61 EHQGELWVAS PLKKQRFRLS DGLCMEDEQF SVKHYEARVK DGVVQLRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2jo6A
Description:	No description for 2jo6A was found.

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	4.14993304522786	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	4.14993304522786	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.9271223895757	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.76503174823869	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.73915691834026	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	3.30005888638622	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.96070332606483	bayes_pls_golite062009
cation transmembrane transporter activity	2.63750663816019	bayes_pls_golite062009
ion transmembrane transporter activity	2.33992572389215	bayes_pls_golite062009
electron carrier activity	2.2277730493777	bayes_pls_golite062009
oxidoreductase activity	1.79992184100284	bayes_pls_golite062009
catalytic activity	0.746741393172769	bayes_pls_golite062009
iron-sulfur cluster binding	0.189086586993314	bayes_pls_golite062009
metal cluster binding	0.189086586993314	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: