YRC Public Data Repository - Protein Structure Prediction

Protein:	NARW_ECOLI
Organism:	Escherichia coli
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NARW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62127781, gi\|... - gi\|62180148\|ref\|YP_216565.1\| nitrate reductase 2, gamma subunit [Salmonella enterica subsp. enterica...	221.0	[0..1]	[229..1]
gi\|75257734, gi\|... - gi\|75257734\|ref\|ZP_00729219.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E22], gi\|1... gi\|75212839, gi\|... - gi\|75212839\|ref\|ZP_00712837.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli B171], gi\|... gi\|218351737, gi... - gi\|218695005\|ref\|YP_002402672.1\| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escher... gi\|209918746, gi... - gi\|209918746\|ref\|YP_002292830.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli SE11], ...	209.0	[0..1]	[231..1]
gi\|25300710, gi\|... - pir\|\|D85730 cryptic nitrate reductase 2 delta subunit [imported] - Escherichia coli (strain O157:H7,... gi\|15801672, gi\|... - gi\|15801672\|ref\|NP_287690.1\| cryptic nitrate reductase 2, delta subunit, assembly function [Escheric... gi\|208815325, gi... - gi\|208815325\|ref\|ZP_03256504.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheric... gi\|13361535, gi\|... - gi\|15831323\|ref\|NP_310096.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli O157:H7], g... gi\|13361535, gi\|... - gi\|15831323\|ref\|NP_310096.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli O157:H7 str... gi\|208724476, gi... - gi\|208810970\|ref\|ZP_03252803.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheric... gi\|195936959 - gi\|195936959\|ref\|ZP_03082341.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli O157:H7 ... gi\|168799401, gi... - gi\|189378157\|gb\|EDU96573.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|217317703, gi... - gi\|217329264\|ref\|ZP_03445344.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheric... gi\|209162011, gi... - gi\|209400611\|ref\|YP_002270470.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheri... gi\|208740141, gi... - gi\|208820018\|ref\|ZP_03260338.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheric... gi\|189368117, gi... - gi\|189368117\|gb\|EDU86533.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|189356707, gi... - gi\|189356707\|gb\|EDU75126.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|188016651, gi... - gi\|188016651\|gb\|EDU54773.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|189371729, gi... - gi\|189371729\|gb\|EDU90145.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|168781443, gi... - gi\|189000855\|gb\|EDU69841.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|187770066, gi... - gi\|187770066\|gb\|EDU33910.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|189361902, gi... - gi\|189361902\|gb\|EDU80321.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escherichia ... gi\|254793013, gi... - gi\|254793013\|ref\|YP_003077850.1\| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escher...	209.0	[0..1]	[231..1]
gi\|218360761, gi... - gi\|218553993\|ref\|YP_002386906.1\| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escher... gi\|74312169, gi\|... - gi\|74312169\|ref\|YP_310588.1\| cryptic nitrate reductase 2, delta subunit, assembly function [Shigella...	208.0	[0..1]	[231..1]
gi\|75512580, gi\|... - gi\|75512580\|ref\|ZP_00735103.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli 53638], gi...	208.0	[0..1]	[231..1]
gi\|218704938, gi... - gi\|218704938\|ref\|YP_002412457.1\| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escher... gi\|170683975, gi... - gi\|170683975\|ref\|YP_001743762.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Escheri... gi\|26108158, gi\|... - gi\|26247756\|ref\|NP_753796.1\| respiratory nitrate reductase 2 delta chain [Escherichia coli CFT073], ... gi\|227886140, gi... - gi\|227886140\|ref\|ZP_04003945.1\| respiratory nitrate reductase 2 delta chain [Escherichia coli 83972]...	207.0	[0..1]	[231..1]
gi\|110343238, gi... - gi\|110641646\|ref\|YP_669376.1\| respiratory nitrate reductase 2 delta chain [Escherichia coli 536], gi... gi\|75240186, gi\|... - gi\|75240186\|ref\|ZP_00724138.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli F11], gi\|1...	205.0	[0..1]	[231..1]
gi\|81241064, gi\|... - gi\|82776916\|ref\|YP_403265.1\| cryptic nitrate reductase 2, delta subunit, assembly function [Shigella...	205.0	[0..1]	[231..1]
gi\|91072281, gi\|... - gi\|91210707\|ref\|YP_540693.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli UTI89], gi\|... gi\|237705446, gi... - gi\|237705446\|ref\|ZP_04535927.1\| cryptic nitrate reductase 2 delta subunit [Escherichia sp. 3_2_53FAA... gi\|218558391, gi... - gi\|218558391\|ref\|YP_002391304.1\| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escher... gi\|117623704, gi... - gi\|117623704\|ref\|YP_852617.1\| cryptic nitrate reductase 2 delta subunit [Escherichia coli APEC O1], ...	203.0	[0..1]	[231..1]
gi\|213865517 - gi\|213865517\|ref\|ZP_03387636.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonel... gi\|213648505 - gi\|213648505\|ref\|ZP_03378558.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonel... gi\|214001420 - gi\|214001420\|ref\|ZP_03412155.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonel... gi\|16760300 - gi\|16760300\|ref\|NP_455917.1\| respiratory nitrate reductase 2 delta chain [Salmonella enterica subsp.... gi\|194451301, gi... - gi\|194451301\|ref\|YP_002045619.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmone... gi\|168241120, gi... - gi\|205339473\|gb\|EDZ26237.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonella e... gi\|213619188 - gi\|213619188\|ref\|ZP_03373014.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonel... gi\|25300712, gi\|... - gi\|25300712\|pir\|\|AH0671 respiratory nitrate reductase 2 delta chain [imported] - Salmonella enterica... gi\|213163640 - gi\|213163640\|ref\|ZP_03349350.1\| nitrate reductase molybdenum cofactor assembly chaperone 2 [Salmonel...	201.0	[0..1]	[231..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILKVIGLL MEYPDELLWE CKEDALALIR RDAPMLTDFT HNLLNAPLLD KQAEWCEVFD  60
   61 RGRTTSLLLF EHVHAESRDR GQAMVDLLAE YEKVGLQLDC RELPDYLPLY LEYLSVLPDD 120
  121 QAKEGLLNVA PILALLGGRL KQREAPWYAL FDALLQLAGS SLSSDSVTKQ VNSEERDDTR 180
  181 QALDAVWEEE QVKFIEDNAT ACDSSPLNQY QRRFSQDVAP QYVDISAGGG K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2o9xA
Description:	No description for 2o9xA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.685658944373883	bayes_pls_golite062009
protein binding	0.343281137579891	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: