YRC Public Data Repository - Protein Structure Prediction

Protein:	MREB_ECOLI
Organism:	Escherichia coli
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MREB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|94387119 - gi\|94387119\|ref\|XP_994676.1\| PREDICTED: similar to heat shock protein 8 [Mus musculus]	0.0	[10..346]	[67..453]
gi\|73954621 - gi\|73954621\|ref\|XP_859437.1\| PREDICTED: similar to heat shock protein 8 isoform 3 [Canis familiaris]	0.0	[10..346]	[4..390]
gi\|27802643 - gi\|27802643\|gb\|AAO21473.1\| hsp70 family member [Locusta migratoria]	0.0	[10..346]	[5..391]
gi\|55733108 - gi\|55733108\|emb\|CAH93238.1\| hypothetical protein [Pongo abelii] gi\|55733108\|emb\|... - hypothetical protein [Pongo pygmaeus]	0.0	[10..346]	[4..390]
gi\|45544523 - gi\|45544523\|dbj\|BAD12572.1\| heat shock protein [Numida meleagris] gi\|50759965 - ref\|XP_429266.1\| PREDICTED: hypothetical protein XP_429266 [Gallus gallus] gi\|118722053, gi... - gi\|118722053\|dbj\|BAF38392.1\| heat shock protein 70kDa [Coturnix japonica], gi\|118197131\|dbj\|BAF37041...	0.0	[10..346]	[4..390]
gi\|123980484, gi... - gi\|123995299\|gb\|ABM85251.1\| heat shock 70kDa protein 8 [synthetic construct], gi\|123980484\|gb\|ABM820... HSP7C_HORSE - Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1 gi\|197097502 - gi\|197097502\|ref\|NP_001125783.1\| heat shock 70kDa protein 8 [Pongo abelii] gi\|109109056 - gi\|109109056\|ref\|XP_001108049.1\| PREDICTED: heat shock 70kDa protein 8 [Macaca mulatta] gi\|55729181 - gi\|55729181\|emb\|CAH91327.1\| hypothetical protein [Pongo abelii] gi\|183636984 - gi\|183636984\|gb\|ACC64541.1\| heat shock protein 8 (predicted) [Rhinolophus ferrumequinum] HSP7C_SAGOE - Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1 gi\|57085907 - gi\|57085907\|ref\|XP_536543.1\| PREDICTED: similar to Heat shock cognate 71 kDa protein (Heat shock 70 ... tr\|M3VW17\|M3VW17... - Uncharacterized protein OS=Felis catus GN=HSPA8 PE=3 SV=1 HSPA8 - heat shock 70kDa protein 8 gi\|114640901 - gi\|114640901\|ref\|XP_508830.2\| PREDICTED: heat shock 70kDa protein 8 [Pan troglodytes]	0.0	[10..346]	[4..390]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKFRGMFS NDLSIDLGTA NTLIYVKGQG IVLNEPSVVA IRQDRAGSPK SVAAVGHDAK  60
   61 QMLGRTPGNI AAIRPMKDGV IADFFVTEKM LQHFIKQVHS NSFMRPSPRV LVCVPVGATQ 120
  121 VERRAIRESA QGAGAREVFL IEEPMAAAIG AGLPVSEATG SMVVDIGGGT TEVAVISLNG 180
  181 VVYSSSVRIG GDRFDEAIIN YVRRNYGSLI GEATAERIKH EIGSAYPGDE VREIEVRGRN 240
  241 LAEGVPRGFT LNSNEILEAL QEPLTGIVSA VMVALEQCPP ELASDISERG MVLTGGGALL 300
  301 RNLDRLLMEE TGIPVVVAED PLTCVARGGG KALEMIDMHG GDLFSEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.30103
Match:	1jceA
Description:	Prokaryotic actin homolog MreB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.778934303209369	bayes_pls_golite062009
protein binding	0.238186535482463	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: