YRC Public Data Repository - Protein Structure Prediction

Protein:	MLTA_ECOLI
Organism:	Escherichia coli
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MLTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115514164, gi... - gi\|117625040\|ref\|YP_854028.1\| membrane-bound lytic murein transglycosylase A precursor [Escherichia ...	482.0	[0..1]	[365..68]
gi\|191171295, gi... - gi\|191171295\|ref\|ZP_03032845.1\| membrane-bound lytic murein transglycosylase A [Escherichia coli F11... gi\|110344546, gi... - gi\|110642954\|ref\|YP_670684.1\| membrane-bound lytic murein transglycosylase A precursor [Escherichia ...	482.0	[0..1]	[365..68]
gi\|26109626, gi\|... - gi\|26249219\|ref\|NP_755259.1\| Membrane-bound lytic murein transglycosylase A precursor [Escherichia c...	480.0	[0..1]	[365..113]
gi\|91212183, gi\|... - gi\|91212183\|ref\|YP_542169.1\| membrane-bound lytic murein transglycosylase A precursor [Escherichia c...	480.0	[0..1]	[365..112]
gi\|882708\|gb\|AAB... - ORF_f432 gi\|882708 - gi\|882708\|gb\|AAB40463.1\| ORF_f432 gi\|124500305, gi... - gi\|124528777\|ref\|ZP_01700001.1\| MltA domain protein [Escherichia coli B], gi\|124500305\|gb\|EAY47780.1... gi\|226839491, gi... - gi\|254037867\|ref\|ZP_04871925.1\| membrane-bound lytic Murein transglycosylase A [Escherichia sp. 1_1_...	479.0	[0..1]	[365..68]
gi\|81242340, gi\|... - gi\|82778192\|ref\|YP_404541.1\| murein transglycosylase A [Shigella dysenteriae Sd197], gi\|81242340\|gb\|...	473.0	[0..1]	[365..1]
gi\|56480187, gi\|... - gi\|56480187\|ref\|NP_708607.2\| murein transglycosylase A [Shigella flexneri 2a str. 301], gi\|56383738\|... gi\|110616301, gi... - gi\|110806753\|ref\|YP_690273.1\| murein transglycosylase A [Shigella flexneri 5 str. 8401], gi\|11061630... gi\|30064158, gi\|... - gi\|30064158\|ref\|NP_838329.1\| murein transglycosylase A [Shigella flexneri 2a str. 2457T], gi\|3004241...	471.0	[0..1]	[365..1]
gi\|81246522, gi\|... - gi\|82545111\|ref\|YP_409058.1\| murein transglycosylase A [Shigella boydii Sb227], gi\|81246522\|gb\|ABB67... gi\|187427952, gi... - gi\|187730960\|ref\|YP_001881448.1\| membrane-bound lytic murein transglycosylase A [Shigella boydii CDC...	469.0	[0..1]	[365..1]
lcl\|NC_016856.1_... - [gene=mltA] [protein=murein transglycosylase A] [protein_id=YP_005239110.1] [location=complement(315... gi\|197363865, gi... - gi\|197363865\|ref\|YP_002143502.1\| murein transglycosylase A [Salmonella enterica subsp. enterica sero... gi\|206710056, gi... - gi\|207858253\|ref\|YP_002244904.1\| murein transglycosylase A [Salmonella enterica subsp. enterica sero... gi\|161615924, gi... - gi\|161615924\|ref\|YP_001589889.1\| murein transglycosylase A [Salmonella enterica subsp. enterica sero... gi\|238909767 - gi\|238909767\|ref\|ZP_04653604.1\| murein transglycosylase A [Salmonella enterica subsp. enterica serov... gi\|16421539, gi\|... - gi\|16766292\|ref\|NP_461907.1\| murein transglycosylase A [Salmonella typhimurium LT2], gi\|16421539\|gb\|... gi\|56414937, gi\|... - gi\|56414937\|ref\|YP_152012.1\| murein transglycosylase A [Salmonella enterica subsp. enterica serovar ...	467.0	[0..1]	[365..1]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRWVKYLL MGTVVAMLAA CSSKPTDRGQ QYKDGKFTQP FSLVNQPDAV GAPINAGDFA  60
   61 EQINHIRNSS PRLYGNQSNV YNAVQEWLRA GGDTRNMRQF GIDAWQMEGA DNYGNVQFTG 120
  121 YYTPVIQARH TRQGEFQYPI YRMPPKRGRL PSRAEIYAGA LSDKYILAYS NSLMDNFIMD 180
  181 VQGSGYIDFG DGSPLNFFSY AGKNGHAYRS IGKVLIDRGE VKKEDMSMQA IRHWGETHSE 240
  241 AEVRELLEQN PSFVFFKPQS FAPVKGASAV PLVGRASVAS DRSIIPPGTT LLAEVPLLDN 300
  301 NGKFNGQYEL RLMVALDVGG AIKGQHFDIY QGIGPEAGHR AGWYNHYGRV WVLKTAPGAG 360
  361 NVFSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	2gaeA
Description:	No description for 2gaeA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.740488970089403	bayes_pls_golite062009
binding	0.616193234665006	bayes_pls_golite062009
lytic transglycosylase activity	0.261623734205758	bayes_pls_golite062009
protein binding	0.21382356589102	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: