YRC Public Data Repository - Protein Structure Prediction

Protein:	MASY_ECOLI
Organism:	Escherichia coli
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MASY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75211896, gi\|... - gi\|75211896\|ref\|ZP_00711951.1\| COG2225: Malate synthase [Escherichia coli B171], gi\|194426721\|ref\|ZP... gi\|75197873, gi\|... - gi\|75197873\|ref\|ZP_00707943.1\| COG2225: Malate synthase [Escherichia coli HS], gi\|157163479\|ref\|YP_0... gi\|218363333, gi... - gi\|218556564\|ref\|YP_002389478.1\| malate synthase [Escherichia coli IAI1], gi\|218363333\|emb\|CAR00984....	588.0	[0..1]	[533..1]
gi\|190902493, gi... - gi\|75229421\|ref\|ZP_00715973.1\| COG2225: Malate synthase [Escherichia coli B7A], gi\|191167451\|ref\|ZP_... gi\|75188739, gi\|... - gi\|75188739\|ref\|ZP_00702006.1\| COG2225: Malate synthase [Escherichia coli E24377A], gi\|157155521\|ref...	588.0	[0..1]	[533..1]
gi\|242379545, gi... - gi\|251787272\|ref\|YP_003001576.1\| hypothetical protein B21_03846 [Escherichia coli BL21], gi\|24237954... gi\|253975852, gi... - gi\|254163951\|ref\|YP_003047059.1\| malate synthase [Escherichia coli B str. REL606], gi\|253975852\|gb\|A... gi\|253775361, gi... - gi\|254290701\|ref\|YP_003056449.1\| malate synthase [Escherichia coli BL21(DE3)], gi\|253980008\|gb\|ACT45... gi\|83587109, gi\|... - gi\|83587109\|ref\|ZP_00925738.1\| COG2225: Malate synthase [Escherichia coli 101-1], gi\|194437195\|ref\|Z...	588.0	[0..1]	[533..1]
gi\|193067900, gi... - gi\|75238551\|ref\|ZP_00722540.1\| COG2225: Malate synthase [Escherichia coli E110019], gi\|193067900\|ref...	587.0	[0..1]	[533..1]
gi\|91075100, gi\|... - gi\|91213526\|ref\|YP_543512.1\| malate synthase [Escherichia coli UTI89], gi\|91075100\|gb\|ABE09981.1\| ma... gi\|237703560, gi... - gi\|237703560\|ref\|ZP_04534041.1\| malate synthase A [Escherichia sp. 3_2_53FAA], gi\|226901472\|gb\|EEH87... gi\|117626275, gi... - gi\|117626275\|ref\|YP_859598.1\| malate synthase [Escherichia coli APEC O1], gi\|115515399\|gb\|ABJ03474.1...	587.0	[0..1]	[533..7]
gi\|75514776, gi\|... - gi\|75514776\|ref\|ZP_00737005.1\| COG2225: Malate synthase [Escherichia coli 53638], gi\|188495032\|ref\|Z...	586.0	[0..1]	[533..1]
gi\|75258933, gi\|... - gi\|75258933\|ref\|ZP_00730301.1\| COG2225: Malate synthase [Escherichia coli E22], gi\|193063077\|ref\|ZP_...	586.0	[0..1]	[533..1]
gi\|26111214, gi\|... - gi\|26250783\|ref\|NP_756823.1\| malate synthase [Escherichia coli CFT073], gi\|26111214\|gb\|AAN83397.1\|AE...	584.0	[0..1]	[533..7]
gi\|217321792, gi... - gi\|217325571\|ref\|ZP_03441655.1\| malate synthase A [Escherichia coli O157:H7 str. TW14588], gi\|217321... gi\|254595407, gi... - gi\|254796007\|ref\|YP_003080844.1\| malate synthase A [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|208809394, gi... - gi\|208809394\|ref\|ZP_03251731.1\| malate synthase A [Escherichia coli O157:H7 str. EC4206], gi\|2087291... gi\|208813916, gi... - gi\|208813916\|ref\|ZP_03255245.1\| malate synthase A [Escherichia coli O157:H7 str. EC4045], gi\|2087351... gi\|208820865, gi... - gi\|208820865\|ref\|ZP_03261185.1\| malate synthase A [Escherichia coli O157:H7 str. EC4042], gi\|2087409... gi\|209400453, gi... - gi\|209400453\|ref\|YP_002273526.1\| malate synthase A [Escherichia coli O157:H7 str. EC4115], gi\|209161... gi\|189001710, gi... - gi\|189001710\|gb\|EDU70696.1\| malate synthase A [Escherichia coli O157:H7 str. EC4076], gi\|168780396\|r... gi\|189374727, gi... - gi\|189374727\|gb\|EDU93143.1\| malate synthase A [Escherichia coli O157:H7 str. EC869], gi\|168784598\|re... gi\|209751592, gi... - pir\|\|B86093 malate synthase A [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pir... gi\|168798355, gi... - gi\|189379116\|gb\|EDU97532.1\| malate synthase A [Escherichia coli O157:H7 str. EC508], gi\|168798355\|re... gi\|195935772 - gi\|195935772\|ref\|ZP_03081154.1\| malate synthase [Escherichia coli O157:H7 str. EC4024] gi\|15804600, gi\|... - gi\|15804600\|ref\|NP_290641.1\| malate synthase [Escherichia coli O157:H7 EDL933], gi\|12518944\|gb\|AAG59... gi\|168755153, gi... - gi\|189357559\|gb\|EDU75978.1\| malate synthase A [Escherichia coli O157:H7 str. EC4401], gi\|168755153\|r... gi\|15834186, gi\|... - gi\|15834186\|ref\|NP_312959.1\| malate synthase [Escherichia coli O157:H7], gi\|13364408\|dbj\|BAB38355.1\|... gi\|189368506, gi... - gi\|189368506\|gb\|EDU86922.1\| malate synthase A [Escherichia coli O157:H7 str. EC4501], gi\|168760848\|r... gi\|189364262, gi... - gi\|189364262\|gb\|EDU82681.1\| malate synthase A [Escherichia coli O157:H7 str. EC4486], gi\|168766244\|r... gi\|187769872, gi... - gi\|187769872\|gb\|EDU33716.1\| malate synthase A [Escherichia coli O157:H7 str. EC4196], gi\|168774340\|r... gi\|188015040, gi... - gi\|188015040\|gb\|EDU53162.1\| malate synthase A [Escherichia coli O157:H7 str. EC4113], gi\|168750867\|r... gi\|15834186, gi\|... - gi\|15834186\|ref\|NP_312959.1\| malate synthase [Escherichia coli O157:H7 str. Sakai], gi\|13364408\|dbj\|...	583.0	[0..1]	[533..1]
gi\|187428477, gi... - gi\|75179630\|ref\|ZP_00699634.1\| COG2225: Malate synthase [Shigella boydii BS512], gi\|187731485\|ref\|YP...	583.0	[0..1]	[533..1]

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Predicted Domain #1

Region A:
Residues: [1-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQATTTDE LAFTRPYGEQ EKQILTAEAV EFLTELVTHF TPQRNKLLAA RIQQQQDIDN  60
   61 GTLPDFISET ASIRDADWKI RGIPADLEDR RVEITGPVER KMVINALNAN VKVFMADFED 120
  121 SLAPDWNKVI DGQINLRDAV NGTISYTNEA GKIYQLKPNP AVLICRVRGL HLPEKHVTWR 180
  181 GEAIPGSLFD FALYFFHNYQ ALLAKGSGPY FYLPKTQSWQ EAAWWSEVFS YAEDRFNLPR 240
  241 GTIKATLLIE TLPAVFQMDE ILHALRDHIV GLNCGRWDYI FSYIKTLKNY PDRVLPDRQA 300
  301 VTMDKPFLNA YSRLLIKTCH KRGAFAMGGM AAFIPSKDEE HNNQVLNKVK ADKSLEANNG 360
  361 HDGTWIAHPG LADTAMAVFN DILGSRKNQL EVMREQDAPI TADQLLAPCD GERTEEGMRA 420
  421 NIRVAVQYIE AWISGNGCVP IYGLMEDAAT AEISRTSIWQ WIHHQKTLSN GKPVTKALFR 480
  481 QMLGEEMKVI ASELGEERFS QGRFDDAARL MEQITTSDEL IDFLTLPGYR LLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	2gq3A
Description:	No description for 2gq3A was found.

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	4.27762948199878	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.61158006337608	bayes_pls_golite062009
catalytic activity	1.23634637968745	bayes_pls_golite062009
transferase activity	0.263512092168681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: