YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXK_ECOLI
Organism:	Escherichia coli
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|208737817, gi... - gi\|208822332\|ref\|ZP_03262651.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC404... gi\|208815164, gi... - gi\|208815164\|ref\|ZP_03256343.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC404... gi\|217321747, gi... - gi\|217325526\|ref\|ZP_03441610.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. TW145... LPXK_ECO5E - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lpxK PE=3 SV=1 gi\|189376432, gi... - gi\|189376432\|gb\|EDU94848.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC508], g... gi\|189372597, gi... - gi\|189372597\|gb\|EDU91013.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC869], g... LPXK_ECO57 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O157:H7 GN=lpxK PE=3 SV=1 gi\|208726594, gi... - gi\|208806793\|ref\|ZP_03249130.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC420... gi\|13360457, gi\|... - gi\|15830252\|ref\|NP_309025.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. Sakai], ... gi\|195940072 - gi\|195940072\|ref\|ZP_03085454.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC402... gi\|189361155, gi... - gi\|189361155\|gb\|EDU79574.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4486], ... gi\|189366826, gi... - gi\|189366826\|gb\|EDU85242.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4501], ... gi\|188998653, gi... - gi\|188998653\|gb\|EDU67639.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4076], ... gi\|187768366, gi... - gi\|187768366\|gb\|EDU32210.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4196], ... gi\|254792114, gi... - gi\|254792114\|ref\|YP_003076951.1\| lipid A 4' kinase [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|189355915, gi... - gi\|189355915\|gb\|EDU74334.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4401], ... gi\|168751178, gi... - gi\|188014724\|gb\|EDU52846.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 str. EC4113], ... gi\|25345571, gi\|... - pir\|\|D85617 probable aldehyde oxidase ycaH [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12514084, gi\|... - gi\|15800776\|ref\|NP_286790.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli O157:H7 EDL933], gi\|1...	354.0	[0..1]	[328..1]
LPXK_ECO45 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lpxK PE=3 SV=1 LPXK_ECOK1 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O1:K1 / APEC GN=lpxK PE=3 SV=1 gi\|226898307, gi... - gi\|237707097\|ref\|ZP_04537578.1\| tetraacyldisaccharide 4'-kinase [Escherichia sp. 3_2_53FAA], gi\|2268... LPXK_ECOUT - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=lpxK PE=3 SV=1	354.0	[0..1]	[328..1]
gi\|194420285, gi... - gi\|83571216\|ref\|ZP_00922657.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Shigella dysenteriae 10...	354.0	[0..1]	[328..1]
LPXK_ECO24 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lpxK PE=3 SV...	354.0	[0..1]	[328..1]
gi\|75229879, gi\|... - gi\|75229879\|ref\|ZP_00716402.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli B7A], ...	353.0	[0..1]	[328..1]
LPXK_SHIFL - Tetraacyldisaccharide 4'-kinase OS=Shigella flexneri GN=lpxK PE=3 SV=1 LPXK_ECOHS - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O9:H4 (strain HS) GN=lpxK PE=3 SV=1 gi\|24112323, gi\|... - gi\|24112323\|ref\|NP_706833.1\| tetraacyldisaccharide 4'-kinase [Shigella flexneri 2a str. 301], gi\|240... gi\|30040695, gi\|... - gi\|30062449\|ref\|NP_836620.1\| tetraacyldisaccharide 4'-kinase [Shigella flexneri 2a str. 2457T], gi\|3... LPXK_SHISS - Tetraacyldisaccharide 4'-kinase OS=Shigella sonnei (strain Ss046) GN=lpxK PE=3 SV=1 gi\|75512071, gi\|... - gi\|75512071\|ref\|ZP_00734656.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli 53638]... LPXK_ECOLC - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lpxK P... gi\|192955929, gi... - gi\|75234402\|ref\|ZP_00718763.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli E11001... LPXK_ECOSE - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli (strain SE11) GN=lpxK PE=3 SV=1 LPXK_ECO8A - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O8 (strain IAI1) GN=lpxK PE=3 SV=1 LPXK_ECO55 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli (strain 55989 / EAEC) GN=lpxK PE=3 SV=1 gi\|124530140, gi... - gi\|124530140\|ref\|ZP_01700910.1\| tetraacyldisaccharide 4'-kinase [Escherichia coli B], gi\|124499427\|g...	353.0	[0..1]	[328..1]
LPXK_SHIDS - Tetraacyldisaccharide 4'-kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lpxK PE=3 SV=1	352.0	[0..1]	[328..1]
LPXK_SHIB3 - Tetraacyldisaccharide 4'-kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lpxK ...	352.0	[0..1]	[328..1]
gi\|193064622, gi... - gi\|75257370\|ref\|ZP_00728886.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli E22], ... gi\|194413599, gi... - gi\|75210396\|ref\|ZP_00710552.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli B171],...	351.0	[0..1]	[328..1]
LPXK_ECOL5 - Tetraacyldisaccharide 4'-kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lpxK PE=3 SV=1 gi\|191172043, gi... - gi\|75240990\|ref\|ZP_00724879.1\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Escherichia coli F11], ...	351.0	[0..1]	[328..1]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKIWSGES PLWRLLLPLS WLYGLVSGAI RLCYKLKLKR AWRAPVPVVV VGNLTAGGNG  60
   61 KTPVVVWLVE QLQQRGIRVG VVSRGYGGKA ESYPLLLSAD TTTAQAGDEP VLIYQRTDAP 120
  121 VAVSPVRSDA VKAILAQHPD VQIIVTDDGL QHYRLARDVE IVVIDGVRRF GNGWWLPAGP 180
  181 MRERAGRLKS VDAVIVNGGV PRSGEIPMHL LPGQAVNLRT GTRCDVAQLE HVVAMAGIGH 240
  241 PPRFFATLKM CGVQPEKCVP LADHQSLNHA DVSALVSAGQ TLVMTEKDAV KCRAFAEENW 300
  301 WYLPVDAQLS GDEPAKLLTQ LTLLASGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	1qzwA
Description:	Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
binding	0.712909626033412	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: