YRC Public Data Repository - Protein Structure Prediction

Protein:	KPTA_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPTA_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|34103736, gi\|... - gi\|34497880\|ref\|NP_902095.1\| hypothetical protein CV_2425 [Chromobacterium violaceum ATCC 12472], gi...	263.0	[0..6]	[180..35]
KPTA_NOSP7 - Probable RNA 2'-phosphotransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=kptA PE=...	263.0	[0..3]	[177..7]
KPTA_CHRVO - Probable RNA 2'-phosphotransferase OS=Chromobacterium violaceum GN=kptA PE=3 SV=2 KPTA_CHRVO - Probable RNA 2'-phosphotransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM...	262.0	[0..6]	[180..21]
gi\|163849264, gi... - gi\|76258043\|ref\|ZP_00765700.1\| Phosphotransferase KptA/Tpt1 [Chloroflexus aurantiacus J-10-fl], gi\|7...	259.0	[0..3]	[178..31]
KPTA_BURS3 - Probable RNA 2'-phosphotransferase OS=Burkholderia sp. (strain 383) GN=kptA PE=3 SV=1 KPTA_BURL3 - Probable RNA 2'-phosphotransferase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 ...	259.0	[0..3]	[183..14]
gi\|148568051, gi... - gi\|148655941\|ref\|YP_001276146.1\| phosphate acetyltransferase [Roseiflexus sp. RS-1], gi\|148568051\|gb...	255.0	[0..3]	[177..5]
KPTA_PSESM - Probable RNA 2'-phosphotransferase OS=Pseudomonas syringae pv. tomato GN=kptA PE=3 SV=1 KPTA_PSESM - Probable RNA 2'-phosphotransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=kptA PE=3 S...	253.0	[0..2]	[180..6]
KPTA_FLAJ1 - Probable RNA 2'-phosphotransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW10...	251.0	[0..5]	[176..9]
gi\|149904695, gi... - gi\|82747814\|ref\|ZP_00910307.1\| probable RNA 2'-phosphotransferase [Clostridium beijerincki NCIMB 805...	251.0	[0..4]	[176..8]
gi\|67856666, gi\|... - gi\|67921554\|ref\|ZP_00515072.1\| Phosphotransferase KptA/Tpt1 [Crocosphaera watsonii WH 8501], gi\|6785...	250.0	[0..3]	[176..26]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTATSKFLS YVLRHAPESI GLVLDSQGWA DVADLLAKAN ASGTPLDEAG LRAVVAESDK  60
   61 KRFTLSEDGR RIRAAQGHSV KVDLGQPPVE PPPQLFHGTA TRFLEPILRE GLRPGERQQV 120
  121 HLSADRTTAL AVGQRHGKPV VLIVDAGQMF ADGCRFYLAD NGVWLTDAVP FSYLTVSADS 180
  181 SAENDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	1wfxA
Description:	Crystal Structure of APE0204 from Aeropyrum pernix
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	1.7229093219327	bayes_pls_golite062009
NAD+ ADP-ribosyltransferase activity	1.61571758931023	bayes_pls_golite062009
catalytic activity	1.25705748974699	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.789416780073681	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.355594977942641	bayes_pls_golite062009
binding	0.212977268771834	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: