| Protein: | acj6-PD |
| Organism: | Drosophila melanogaster |
| Length: | 394 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acj6-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
123.0 | [0..1] | [394..1] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MTMSMYSTTD KMKMSAPSCF PGRYSPSYRS SEQMRRCMPN PSIHISSSCD SLESRLLEDA 60
61 SLLCNSWSAR QNGDIFAGIN DGILSRAEAL AAVDIQKHQA QHVHSQMPSQ IKHDVMYHHH 120
121 SMSGPPQRPL QENPFSRQMH HSMDQLDMLD PTGSMTTLAP ISESPLTPT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [170-394] |
1 11 21 31 41 51
| | | | | |
1 HQHLHGSYHS MNHMMSHHHP GTLSGHTGGH HGHSAVHHPV ITAAVAAAGL HPDTDTDPRE 60
61 LEAFAERFKQ RRIKLGVTQA DVGKALANLK LPGVGALSQS TICRFESLTL SHNNMIALKP 120
121 ILQAWLEEAE AQAKNKRRDP DAPSVLPAGE KKRTSIAAPE KRSLEAYFAV QPRPSGEKIA 180
181 AIAEKLDLKK NVVRVWFCNQ RQKQKRIVSS VTPSMTGHGS AGFGY
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22754992035091 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.15092997144587 | bayes_pls_golite062009 |
| transcription activator activity | 1.82965737603728 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.92393807212912 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| chromatin binding | 0.62573870961765 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
