YRC Public Data Repository - Protein Structure Prediction

Protein:	IDNR_ECOLI
Organism:	Escherichia coli
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDNR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	360.0	[0..6]	[331..3]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	360.0	[0..6]	[331..3]
gi\|37200774, gi\|... - gi\|37676233\|ref\|NP_936629.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200774\|dbj\|BA...	350.0	[0..6]	[332..2]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	349.0	[0..6]	[331..3]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	349.0	[0..5]	[331..2]
PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus GN=purR PE=3 SV=1 PURR_VIBVY - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain YJ016) GN=purR PE=3 SV=1 PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain CMCP6) GN=purR PE=3 SV=1	348.0	[0..6]	[332..2]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNHRISLQD IATLAGVTKM TVSRYIRSPK KVAKETGERI AKIMEEINYI PNRAPGMLLN  60
   61 AQSYTLGILI PSFQNQLFAD ILAGIESVTS EHNYQTLIAN YNYDRDSEEE SVINLLSYNI 120
  121 DGIILSEKYH TIRTVKFLRS ATIPVVELMD VQGERLDMEV GFDNRQAAFD MVCTMLEKRV 180
  181 RHKILYLGSK DDTRDEQRYQ GYCDAMMLHN LSPLRMNPRA ISSIHLGMQL MRDALSANPD 240
  241 LDGVFCTNDD IAMGALLLCR ERNLAVPEQI SIAGFHGLEI GRQMIPSLAS VITPRFDIGR 300
  301 MAAQMLLSKI KNNDHNHNTV DLGYQIYHGN TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.0
Match:	1zvvA
Description:	Crystal structure of a ccpa-crh-dna complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.22720925836419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: