YRC Public Data Repository - Protein Structure Prediction

Protein:	IBPA_ECOLI
Organism:	Escherichia coli
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IBPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78514481, gi\|... - gi\|78697663\|ref\|ZP_00862169.1\| small heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78514481\|gb\|E...	158.0	[0..1]	[137..1]
gi\|86574659, gi\|... - gi\|86751631\|ref\|YP_488127.1\| heat shock protein Hsp20 [Rhodopseudomonas palustris HaA2], gi\|86574659...	155.0	[0..1]	[137..1]
gi\|27382851, gi\|... - gi\|27382851\|ref\|NP_774380.1\| small heat shock protein [Bradyrhizobium japonicum USDA 110], gi\|273560...	153.0	[0..1]	[137..6]
gi\|59710620, gi\|... - gi\|59710620\|ref\|YP_203396.1\| heat shock chaperone [Vibrio fischeri ES114], gi\|59478721\|gb\|AAW84508.1... gi\|197334199, gi... - gi\|197334199\|ref\|YP_002154785.1\| small heat shock protein [Vibrio fischeri MJ11], gi\|197315689\|gb\|AC...	153.0	[0..1]	[137..1]
gi\|110635080, gi... - gi\|69276655\|ref\|ZP_00612249.1\| Heat shock protein Hsp20 [Mesorhizobium sp. BNC1], gi\|68192561\|gb\|EAN...	151.0	[0..1]	[136..15]
IBPA_SALCH - Small heat shock protein ibpA OS=Salmonella choleraesuis GN=ibpA PE=3 SV=1 IBPA_SALTY - Small heat shock protein ibpA OS=Salmonella typhimurium GN=ibpA PE=3 SV=1 IBPA_SALPB - Small heat shock protein IbpA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ibpA PE=3 S... IBPA_SALCH - Small heat shock protein IbpA OS=Salmonella choleraesuis (strain SC-B67) GN=ibpA PE=3 SV=1 gi\|283787612\|ref... - small heat shock protein A [Citrobacter rodentium ICC168] IBPA_SALPA - Small heat shock protein IbpA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ibpA PE=3 SV=... IBPA_SALTY - Small heat shock protein IbpA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ibp... gi\|29139638, gi\|... - gi\|29144002\|ref\|NP_807344.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar Ty... IBPA_SALTI - Small heat shock protein IbpA OS=Salmonella typhi GN=ibpA PE=3 SV=1 gi\|16762513 - gi\|16762513\|ref\|NP_458130.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar Ty... IBPA_SALPB - Small heat shock protein ibpA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ibpA PE=3 S... IBPA_SALTI - Small heat shock protein ibpA OS=Salmonella typhi GN=ibpA PE=3 SV=1 IBPA_SALTY - Small heat shock protein ibpA OS=Salmonella typhimurium GN=ibpA PE=3 SV=1 gi\|213028656 - gi\|213028656\|ref\|ZP_03343103.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... IBPA_SALCH - Small heat shock protein ibpA OS=Salmonella choleraesuis GN=ibpA PE=3 SV=1 IBPA_SALPA - Small heat shock protein ibpA OS=Salmonella paratyphi A GN=ibpA PE=3 SV=1 IBPA_SALSV - Small heat shock protein IbpA OS=Salmonella schwarzengrund (strain CVM19633) GN=ibpA PE=3 SV=1 gi\|195632286, gi... - gi\|195873788\|ref\|ZP_02698758.2\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... IBPA_SALPK - Small heat shock protein IbpA OS=Salmonella paratyphi A (strain AKU_12601) GN=ibpA PE=3 SV=1	151.0	[0..1]	[137..1]
gi\|213423547 - gi\|213423547\|ref\|ZP_03356527.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213163790 - gi\|213163790\|ref\|ZP_03349500.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|206710837, gi... - gi\|207859034\|ref\|YP_002245685.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serova... gi\|204928701, gi... - gi\|204928701\|ref\|ZP_03219900.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|200388470, gi... - gi\|200388470\|ref\|ZP_03215082.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|197939334, gi... - gi\|198244818\|ref\|YP_002217757.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|197240451, gi... - gi\|197262196\|ref\|ZP_03162270.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|197248828, gi... - gi\|197248828\|ref\|YP_002148746.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|194470189, gi... - gi\|194470189\|ref\|ZP_03076173.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|194448742, gi... - gi\|194448742\|ref\|YP_002047840.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serova... gi\|194403692, gi... - gi\|194445029\|ref\|YP_002043057.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|205344457, gi... - gi\|205344457\|gb\|EDZ31221.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|168260412, gi... - gi\|205350286\|gb\|EDZ36917.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205339039, gi... - gi\|205339039\|gb\|EDZ25803.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|168235444, gi... - gi\|197291319\|gb\|EDY30671.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205332532, gi... - gi\|205332532\|gb\|EDZ19296.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|224585609, gi... - gi\|224585609\|ref\|YP_002639408.1\| heat shock protein A [Salmonella enterica subsp. enterica serovar P... gi\|214001475 - gi\|214001475\|ref\|ZP_03412210.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213850309 - gi\|213850309\|ref\|ZP_03381207.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213649776 - gi\|213649776\|ref\|ZP_03379829.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213621959 - gi\|213621959\|ref\|ZP_03374742.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213579708 - gi\|213579708\|ref\|ZP_03361534.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213426322 - gi\|213426322\|ref\|ZP_03359072.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|205329404, gi... - gi\|205329404\|gb\|EDZ16168.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205325556, gi... - gi\|205325556\|gb\|EDZ13395.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|238910146 - gi\|238910146\|ref\|ZP_04653983.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|39546376 - gi\|39546376\|ref\|NP_462709.2\| heat shock protein IbpA [Salmonella typhimurium LT2] lcl\|NC_016856.1_... - [gene=ibpA] [protein=heat shock protein IbpA] [protein_id=YP_005240074.1] [location=complement(40236...	151.0	[0..1]	[137..3]
gi\|54307290, gi\|... - gi\|54307290\|ref\|YP_128310.1\| putative 16kDa heat shock protein A [Photobacterium profundum SS9], gi\|...	151.0	[0..1]	[137..1]
gi\|226838869, gi... - gi\|254038904\|ref\|ZP_04872956.1\| heat shock protein IbpA [Escherichia sp. 1_1_43], gi\|226838869\|gb\|EE... gi\|91213210, gi\|... - gi\|91213210\|ref\|YP_543196.1\| heat shock protein IbpA [Escherichia coli UTI89], gi\|91074784\|gb\|ABE096... gi\|226902750, gi... - gi\|237703486\|ref\|ZP_04533967.1\| heat shock protein IbpA [Escherichia sp. 3_2_53FAA], gi\|226902750\|gb... gi\|26250428, gi\|... - gi\|26250428\|ref\|NP_756468.1\| heat shock protein IbpA [Escherichia coli CFT073], gi\|26110858\|gb\|AAN83... tr\|A0A0G3HRF9\|A0... - Small heat shock protein IbpA OS=Escherichia coli (strain K12) GN=ibpA PE=3 SV=2 gi\|24054256, gi\|... - ref\|NP_709511.1\| heat shock protein [Shigella flexneri 2a str. 301], gb\|AAN45218.1\| heat shock prot...	151.0	[0..1]	[137..3]
hspD - hspD small heat shock protein 986719:987195 forward MW:17205 gi\|192289385, gi... - gi\|192289385\|ref\|YP_001989990.1\| heat shock protein Hsp20 [Rhodopseudomonas palustris TIE-1], gi\|192...	151.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFDLSPLY RSAIGFDRLF NHLENNQSQS NGGYPPYNVE LVDENHYRIA IAVAGFAESE  60
   61 LEITAQDNLL VVKGAHADEQ KERTYLYQGI AERNFERKFQ LAENIHVRGA NLVNGLLYID 120
  121 LERVIPEAKK PRRIEIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: