YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTK_ECOLI
Organism:	Escherichia coli
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|29342814, gi\|... - gi\|29375354\|ref\|NP_814508.1\| amino acid ABC transporter, amino acid-binding/permease protein [Entero... gi\|227554876, gi... - gi\|227554876\|ref\|ZP_03984923.1\| amino acid ABC superfamily ATP binding cassette transporter protein ...	195.0	[0..8]	[223..513]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	192.0	[0..6]	[223..487]
gi\|125624721, gi... - gi\|125624721\|ref\|YP_001033204.1\| glutamine ABC transporter permease and substrate binding protein [L... gi\|62421458 - gi\|62421458\|gb\|AAX82492.1\| GlnP [Lactococcus lactis subsp. cremoris]	191.0	[0..6]	[223..497]
gi\|76788581, gi\|... - gi\|76788581\|ref\|YP_330104.1\| polar amino acid ABC transporter permease/substrate-binding protein [St...	191.0	[0..15]	[223..519]
gi\|25011575, gi\|... - gi\|25011575\|ref\|NP_735970.1\| glutamine ABC transporter permease and substrate binding protein [Strep... gi\|22534494, gi\|... - gi\|22537609\|ref\|NP_688460.1\| glutamine ABC transporter, glutamine-binding protein/permease protein [... gi\|77176225, gi\|... - gi\|77405223\|ref\|ZP_00782321.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|77414125, gi\|... - gi\|77414125\|ref\|ZP_00790292.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|76587007, gi\|... - gi\|76797646\|ref\|ZP_00779916.1\| glutamine ABC transporter permease and substrate binding protein [Str...	191.0	[0..15]	[223..519]
gi\|77411077, gi\|... - gi\|77411077\|ref\|ZP_00787431.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre...	191.0	[0..15]	[223..519]
gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\|AF372619_1 GlnP [Streptococcus agalactiae] gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\| GlnP [Streptococcus agalactiae]	190.0	[0..15]	[223..519]
gi\|24377179, gi\|... - gi\|24379263\|ref\|NP_721218.1\| putative glutamine ABC transporter, permease protein [Streptococcus mut...	190.0	[0..6]	[223..511]
gi\|25401884 - pir\|\|G86844 hypothetical protein glnP [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gi\|15673741, gi\|... - gi\|15673741\|ref\|NP_267915.1\| glutamine ABC transporter permease and substrate binding protein [Lacto...	189.0	[0..6]	[223..497]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEFDWSSIV PSLPYLLDGL VITLKITVTA VVIGILWGTM LAVMRLSSFA PVAWFAKAYV  60
   61 NVFRSIPLVM VLLWFYLIVP GFLQNVLGLS PKNDIRLISA MVAFSMFEAA YYSEIIRAGI 120
  121 QSISRGQSSA ALALGMTHWQ SMKLIILPQA FRAMVPLLLT QGIVLFQDTS LVYVLSLADF 180
  181 FRTASTIGER DGTQVEMILF AGFVYFVISL SASLLVSYLK RRTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.61840729006809	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
ion transmembrane transporter activity	2.42886654788147	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	1.77292242910033	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.77066316989042	bayes_pls_golite062009
cation transmembrane transporter activity	1.54974155411368	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
amine transmembrane transporter activity	1.35745015743741	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
amino acid transmembrane transporter activity	0.702245581829122	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.69074662322395	bayes_pls_golite062009
catalytic activity	0.651599194564243	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
anion transmembrane transporter activity	0.18066368771781	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: