YRC Public Data Repository - Protein Structure Prediction

Protein:	GGT_ECOLI
Organism:	Escherichia coli
Length:	580 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15803956, gi\|... - gi\|15803956\|ref\|NP_289992.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli O1... gi\|15833547, gi\|... - gi\|15833547\|ref\|NP_312320.1\| gamma-glutamyltranspeptidase [Escherichia coli O157:H7], gi\|13363767\|db... gi\|15833547, gi\|... - gi\|15833547\|ref\|NP_312320.1\| gamma-glutamyltranspeptidase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168759480, gi... - gi\|189369458\|gb\|EDU87874.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|25286694, gi\|... - pir\|\|E86011 gamma-glutamyltranspeptidase [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|217321264, gi... - gi\|217325043\|ref\|ZP_03441127.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. TW14588], g... gi\|168785263, gi... - gi\|189374575\|gb\|EDU92991.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. EC869], gi\|1687...	752.0	[0..1]	[580..1]
gi\|193061677, gi... - gi\|75260266\|ref\|ZP_00731534.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli E22], gi\|1930616... gi\|75211812, gi\|... - gi\|75211812\|ref\|ZP_00711876.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli B171], gi\|194427...	751.0	[0..1]	[580..1]
gi\|157080416, gi... - gi\|75188217\|ref\|ZP_00701484.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli E24377A], gi\|157...	750.0	[0..1]	[580..1]
gi\|124528634, gi... - gi\|124528634\|ref\|ZP_01699912.1\| gamma-glutamyltransferase [Escherichia coli B], gi\|124500475\|gb\|EAY4... gi\|170018321, gi... - gi\|170018321\|ref\|YP_001723275.1\| gamma-glutamyltranspeptidase [Escherichia coli ATCC 8739], gi\|16975... gi\|190902671, gi... - gi\|75229547\|ref\|ZP_00716090.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli B7A], gi\|1911673... gi\|157162923, gi... - gi\|75197373\|ref\|ZP_00707443.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli HS], gi\|15716292... gi\|209914163, gi... - gi\|209920904\|ref\|YP_002294988.1\| gamma-glutamyltranspeptidase [Escherichia coli SE11], gi\|209914163\|...	750.0	[0..1]	[580..1]
gi\|30065275, gi\|... - gi\|30065275\|ref\|NP_839446.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri 2... gi\|56480345, gi\|... - gi\|56480345\|ref\|NP_709217.2\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri 2... gi\|110616824, gi... - gi\|110807276\|ref\|YP_690796.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri ...	750.0	[0..1]	[580..1]
gi\|81247222, gi\|... - gi\|82545811\|ref\|YP_409758.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella boydii Sb2...	749.0	[0..1]	[580..1]
gi\|254290121, gi... - gi\|254290121\|ref\|YP_003055869.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia col... gi\|253975272, gi... - gi\|254163371\|ref\|YP_003046479.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia col... gi\|194435816, gi... - gi\|83588691\|ref\|ZP_00927315.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli 101-1], gi\|19443... gi\|251786695, gi... - gi\|251786695\|ref\|YP_003000999.1\| hypothetical protein B21_03249 [Escherichia coli BL21], gi\|24237896...	749.0	[0..1]	[580..1]
gi\|188494591, gi... - gi\|75516088\|ref\|ZP_00738206.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli 53638], gi\|18849...	748.0	[0..1]	[580..1]
gi\|193068785, gi... - gi\|75237045\|ref\|ZP_00721101.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli E110019], gi\|193...	748.0	[0..1]	[580..1]
gi\|117625719, gi... - gi\|117625719\|ref\|YP_859042.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli A... gi\|91212928, gi\|... - gi\|91212928\|ref\|YP_542914.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli UT... gi\|218560509, gi... - gi\|218560509\|ref\|YP_002393422.1\| gamma-glutamyltranspeptidase [Escherichia coli S88], gi\|218367278\|e...	747.0	[0..1]	[580..1]

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Predicted Domain #1

Region A:
Residues: [1-580]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPTFLRRV AIAALLSGSC FSAAAAPPAP PVSYGVEEDV FHPVRAKQGM VASVDATATQ  60
   61 VGVDILKEGG NAVDAAVAVG YALAVTHPQA GNLGGGGFML IRSKNGNTTA IDFREMAPAK 120
  121 ATRDMFLDDQ GNPDSKKSLT SHLASGTPGT VAGFSLALDK YGTMPLNKVV QPAFKLARDG 180
  181 FIVNDALADD LKTYGSEVLP NHENSKAIFW KEGEPLKKGD TLVQANLAKS LEMIAENGPD 240
  241 EFYKGTIAEQ IAQEMQKNGG LITKEDLAAY KAVERTPISG DYRGYQVYSM PPPSSGGIHI 300
  301 VQILNILENF DMKKYGFGSA DAMQIMAEAE KYAYADRSEY LGDPDFVKVP WQALTNKAYA 360
  361 KSIADQIDIN KAKPSSEIRP GKLAPYESNQ TTHYSVVDKD GNAVAVTYTL NTTFGTGIVA 420
  421 GESGILLNNQ MDDFSAKPGV PNVYGLVGGD ANAVGPNKRP LSSMSPTIVV KDGKTWLVTG 480
  481 SPGGSRIITT VLQMVVNSID YGLNVAEATN APRFHHQWLP DELRVEKGFS PDTLKLLEAK 540
  541 GQKVALKEAM GSTQSIMVGP DGELYGASDP RSVDDLTAGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2e0wA
Description:	No description for 2e0wA was found.

Predicted functions:

Term	Confidence	Notes
gamma-glutamyltransferase activity	2.74011689892782	bayes_pls_golite062009
peptidase activity	2.6421095563902	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	2.54551748261349	bayes_pls_golite062009
hydrolase activity	2.49721930187628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32542991193149	bayes_pls_golite062009
endopeptidase activity	2.29890628841519	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	0.752066499785082	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: