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View Structure Prediction Details

Protein: gi|152972839, gi...
Organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|152972839, gi....

Description E-value Query
Range
Subject
Range
gi|124531368, gi... - gi|124531368|ref|ZP_01701678.1| NusG antitermination factor [Escherichia coli B], gi|124498582|gb|EA...
gi|218358575, gi... - gi|218551034|ref|YP_002384825.1| transcription antitermination protein NusG [Escherichia fergusonii ...
gi|218363305, gi... - gi|218556536|ref|YP_002389450.1| transcription antitermination protein NusG [Escherichia coli IAI1],...
gi|218697689, gi... - gi|218697689|ref|YP_002405356.1| transcription antitermination protein NusG [Escherichia coli 55989]...
gi|218372598, gi... - gi|218702612|ref|YP_002410241.1| transcription antitermination protein NusG [Escherichia coli IAI39]...
gi|218707600, gi... - gi|218707600|ref|YP_002415119.1| transcription antitermination protein NusG [Escherichia coli UMN026...
EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl...
gi|157069130, gi... - gi|75197846|ref|ZP_00707916.1| COG0250: Transcription antiterminator [Escherichia coli HS], gi|15716...
gi|73857953, gi|... - gi|74314476|ref|YP_312895.1| transcription antitermination protein NusG [Shigella sonnei Ss046], gi|...
gi|157154871, gi... - gi|75188712|ref|ZP_00701979.1| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi|...
gi|89110057, gi|... - gi|89110057|ref|AP_003837.1| transcription termination factor [Escherichia coli str. K-12 substr. W3...
gi|81242991, gi|... - gi|82778843|ref|YP_405192.1| transcription antitermination protein NusG [Shigella dysenteriae Sd197]...
gi|254795980, gi... - gi|254795980|ref|YP_003080817.1| transcription termination factor [Escherichia coli O157:H7 str. TW1...
gi|81247735, gi|... - gi|82546324|ref|YP_410271.1| transcription antitermination protein NusG [Shigella boydii Sb227], gi|...
gi|254163923, gi... - gi|254163923|ref|YP_003047031.1| transcription antitermination protein NusG [Escherichia coli B str....
gi|226838472, gi... - gi|254039237|ref|ZP_04873286.1| transcription termination/antitermination factor NusG [Escherichia s...
gi|254290673, gi... - gi|254290673|ref|YP_003056421.1| transcription antitermination protein NusG [Escherichia coli BL21(D...
gi|242379512, gi... - gi|251787239|ref|YP_003001543.1| hypothetical protein B21_03811 [Escherichia coli BL21], gi|24237951...
gi|238903038, gi... - gi|238903038|ref|YP_002928834.1| transcription termination factor [Escherichia coli BW2952], gi|2388...
NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2
gi|187427213, gi... - gi|187730221|ref|YP_001882667.1| transcription termination/antitermination factor NusG [Shigella boy...
NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli
gi|15834159, gi|... - gi|15834159|ref|NP_312932.1| transcription antitermination protein NusG [Escherichia coli O157:H7 st...
gi|188487728, gi... - gi|188492529|ref|ZP_02999799.1| transcription termination/antitermination factor NusG [Escherichia c...
gi|24115267, gi|... - gi|24115267|ref|NP_709777.1| transcription antitermination protein NusG [Shigella flexneri 2a str. 3...
gi|110807832, gi... - gi|110807832|ref|YP_691352.1| transcription antitermination protein NusG [Shigella flexneri 5 str. 8...
gi|195939607 - gi|195939607|ref|ZP_03084989.1| transcription antitermination protein NusG [Escherichia coli O157:H7...
gi|30042995, gi|... - gi|30064735|ref|NP_838906.1| transcription antitermination protein NusG [Shigella flexneri 2a str. 2...
gi|208812131, gi... - gi|208812131|ref|ZP_03253460.1| transcription termination/antitermination factor NusG [Escherichia c...
NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2
gi|208739955, gi... - gi|208819832|ref|ZP_03260152.1| transcription termination/antitermination factor NusG [Escherichia c...
EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl...
gi|209399471, gi... - gi|209399471|ref|YP_002273498.1| transcription termination/antitermination factor NusG [Escherichia ...
gi|15804572, gi|... - gi|15804572|ref|NP_290613.1| transcription antitermination protein NusG [Escherichia coli O157:H7 ED...
gi|209914719, gi... - gi|209921460|ref|YP_002295544.1| transcription antitermination protein NusG [Escherichia coli SE11],...
gi|217321655, gi... - gi|217325434|ref|ZP_03441518.1| transcription termination/antitermination factor NusG [Escherichia c...
gi|189354220, gi... - gi|189354220|gb|EDU72639.1| transcription termination/antitermination factor NusG [Escherichia coli ...
gi|189359775, gi... - gi|189359775|gb|EDU78194.1| transcription termination/antitermination factor NusG [Escherichia coli ...
gi|189001643, gi... - gi|189001643|gb|EDU70629.1| transcription termination/antitermination factor NusG [Escherichia coli ...
gi|189370168, gi... - gi|189370168|gb|EDU88584.1| transcription termination/antitermination factor NusG [Escherichia coli ...
gi|170022015, gi... - gi|170022015|ref|YP_001726969.1| transcription antitermination protein NusG [Escherichia coli ATCC 8...
gi|170083442, gi... - gi|170083442|ref|YP_001732762.1| transcription termination factor [Escherichia coli str. K-12 substr...
gi|170682823, gi... - gi|170682823|ref|YP_001746366.1| transcription termination/antitermination factor NusG [Escherichia ...
7.0E-62 [1..181] [1..181]
gi|36783867, gi|... - gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus luminescens su...
1.0E-61 [1..181] [1..181]
gi|238717476, gi... - gi|77960657|ref|ZP_00824519.1| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...
2.0E-61 [1..181] [1..181]
tr|I0QLY7|I0QLY7... - Transcription termination/antitermination protein nusG OS=Serratia sp. M24T3 GN=nusG PE=3 SV=1
gi|84778627, gi|... - gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius str. '...
3.0E-61 [1..181] [1..181]
gi|229686981, gi... - gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis ...
gi|238752784, gi... - gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC 433...
gi|238760251, gi... - gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35...
gi|165928331, gi... - gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|166214413, gi... - gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|166012043, gi... - gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|238794964, gi... - gi|77977799|ref|ZP_00833239.1| COG0250: Transcription antiterminator [Yersinia intermedia ATCC 29909...
gi|238790611, gi... - gi|77972254|ref|ZP_00827826.1| COG0250: Transcription antiterminator [Yersinia frederiksenii ATCC 33...
gi|77635956, gi|... - gi|77635956|ref|ZP_00798035.1| COG0250: Transcription antiterminator [Yersinia pestis Angola], gi|16...
gi|77631229, gi|... - gi|77631229|ref|ZP_00793815.1| COG0250: Transcription antiterminator [Yersinia pseudotuberculosis IP...
Q66FQ7|Q66FQ7_YERPS - Transcription antitermination protein nusG - Yersinia pseudotuberculosis
gi|108781528, gi... - gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis Antiqua], ...
gi|166957158, gi... - gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|108810380, gi... - gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516], gi|2296...
gi|167048191, gi... - gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|21957175, gi|... - gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM], gi|21...
gi|153997214, gi... - gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125], g...
gi|170022592, gi... - gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia pseudotubercul...
NUSG_YERPE - Transcription termination/antitermination protein NusG OS=Yersinia pestis GN=nusG PE=3 SV=3
gi|145212689, gi... - gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis Pestoid...
gi|167426816, gi... - gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|51587915, gi|... - gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis...
gi|45442869, gi|... - gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar Micr...
gi|186893634, gi... - gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia pseudotubercul...
gi|218930757, gi... - gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92], ...
gi|165913811, gi... - gi|89103179|ref|ZP_01175768.1| COG0250: Transcription antiterminator [Yersinia pestis biovar Orienta...
gi|122087631, gi... - gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica...
gi|229837498, gi... - gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A], gi|2...
gi|229695800, gi... - gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis ...
3.0E-61 [1..181] [1..181]
gi|56130232, gi|... - gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica subsp. ...
gi|197364902, gi... - gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica sub...
4.0E-61 [1..181] [1..181]
gi|238713530, gi... - gi|77957017|ref|ZP_00821086.1| COG0250: Transcription antiterminator [Yersinia bercovieri ATCC 43970...
4.0E-61 [1..181] [1..181]
gi|50119178, gi|... - gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium atrosepticum...
gi|227115002 - gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium carotovor...
gi|255056656, gi... - gi|255056656|ref|ZP_05308864.1| NusG antitermination factor [Pectobacterium wasabiae WPP163], gi|254...
gi|227328359 - gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium carotovor...
gi|251753184, gi... - gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp. caro...
6.0E-61 [1..181] [1..181]
NUSG_VIBCH - Transcription termination/antitermination protein NusG OS=Vibrio cholerae serotype O1 (strain ATCC 3...
gi|227012179, gi... - gi|75828308|ref|ZP_00757743.1| COG0250: Transcription antiterminator [Vibrio cholerae O395], gi|2271...
NUSG_VIBCH - Transcription antitermination protein nusG OS=Vibrio cholerae GN=nusG PE=3 SV=3
gi|153827148, gi... - gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2], ...
gi|254851632, gi... - gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10], g...
gi|197750379, gi... - gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae AM-19226...
gi|229369051, gi... - gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae MJ-1236...
gi|229335539, gi... - gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae 12129(1)...
gi|229343102, gi... - gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM 11079...
gi|229516069, gi... - gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9], gi...
gi|229508687, gi... - gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33], gi...
gi|229355987, gi... - gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX 33028...
gi|227080535, gi... - gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2],...
gi|121592079, gi... - gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae 2740-80]...
gi|124117117, gi... - gi|153226871|ref|ZP_01954953.1| transcription antitermination protein NusG [Vibrio cholerae MAK 757]...
2.0E-60 [1..180] [1..180]
gi|54310503, gi|... - gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium profundum SS...
3.0E-60 [1..180] [1..180]

Back

Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAPKKRWY VVQAFSGFEG RVATSLREHI KLHNMEELFG EVMVPTEEVV EIRGGQRRKS  60
   61 ERKFFPGYVL VQMVMNDASW HLVRSVPRVM GFIGGTSDRP APISDKEVDA IMNRLQQVGD 120
  121 KPRPKTLFEP GEMVRVNDGP FADFNGVVEE VDYEKSRLKV SVSIFGRATP VELDFSQVEK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1m1gA
Description: N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription termination factor activity 7.3828495299519 bayes_pls_golite062009
transcription regulator activity 3.63525538465601 bayes_pls_golite062009
structural constituent of ribosome 2.40236111142017 bayes_pls_golite062009
structural molecule activity 2.11748533169546 bayes_pls_golite062009
nucleic acid binding 0.761013355804059 bayes_pls_golite062009
binding 0.302568764609847 bayes_pls_golite062009
DNA binding 0.302556727687398 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle