YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIN_ECOLI
Organism:	Escherichia coli
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|188014151, gi... - gi\|188014151\|gb\|EDU52273.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC411... gi\|168758260, gi... - gi\|189354897\|gb\|EDU73316.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC440... gi\|168764428, gi... - gi\|189365572\|gb\|EDU83988.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC450... gi\|208740533, gi... - gi\|208820410\|ref\|ZP_03260730.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|209158364, gi... - gi\|209396964\|ref\|YP_002271062.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. ... gi\|209919368, gi... - gi\|209919368\|ref\|YP_002293452.1\| flagellar motor switch protein FliN [Escherichia coli SE11], gi\|209... gi\|217317973, gi... - gi\|217328626\|ref\|ZP_03444707.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. T... gi\|218554526, gi... - gi\|218554526\|ref\|YP_002387439.1\| flagellar motor switch protein FliN [Escherichia coli IAI1], gi\|218... gi\|218427505, gi... - gi\|218689941\|ref\|YP_002398153.1\| flagellar motor switch protein FliN [Escherichia coli ED1a], gi\|218... gi\|218695551, gi... - gi\|218695551\|ref\|YP_002403218.1\| flagellar motor switch protein FliN [Escherichia coli 55989], gi\|21... gi\|189359711, gi... - gi\|189359711\|gb\|EDU78130.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC448... gi\|187767381, gi... - gi\|187767381\|gb\|EDU31225.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC419... gi\|188999311, gi... - gi\|188999311\|gb\|EDU68297.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC407... gi\|168790294, gi... - gi\|189370215\|gb\|EDU88631.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869... gi\|168802293, gi... - gi\|189375725\|gb\|EDU94141.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508... gi\|254793596, gi... - gi\|254793596\|ref\|YP_003078433.1\| flagellar motor switching and energizing component [Escherichia col... gi\|195939252 - gi\|195939252\|ref\|ZP_03084634.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|208725150, gi... - gi\|208810634\|ref\|ZP_03252510.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|208731096, gi... - gi\|208816753\|ref\|ZP_03257873.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|157161417, gi... - gi\|75196001\|ref\|ZP_00706071.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|194429933, gi... - gi\|75208811\|ref\|ZP_00709095.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|75228498, gi\|... - gi\|75228498\|ref\|ZP_00715135.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|193071147, gi... - gi\|75233933\|ref\|ZP_00718386.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|192925954, gi... - gi\|75255540\|ref\|ZP_00727332.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|75511437, gi\|... - gi\|75511437\|ref\|ZP_00734112.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|194421509, gi... - gi\|83585019\|ref\|ZP_00923673.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|13362153, gi\|... - gi\|15831939\|ref\|NP_310712.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Saka... gi\|187430149, gi... - gi\|75175124\|ref\|ZP_00695454.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [S... gi\|25300769, gi\|... - pir\|\|E85812 hypothetical protein fliN [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802381, gi\|... - gi\|15802381\|ref\|NP_288407.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933], ... gi\|13362153, gi\|... - gi\|15831939\|ref\|NP_310712.1\| flagellar motor switch protein [Escherichia coli O157:H7], gi\|13362153\|...	144.0	[0..1]	[137..1]
gi\|75190964, gi\|... - gi\|75190964\|ref\|ZP_00704231.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|170521456, gi... - gi\|170683738\|ref\|YP_001743299.1\| flagellar motor switch protein FliN [Escherichia coli SMS-3-5], gi\|...	144.0	[0..1]	[137..1]
gi\|82543592, gi\|... - gi\|82543592\|ref\|YP_407539.1\| flagellar motor switch protein FliN [Shigella boydii Sb227], gi\|8124500...	143.0	[0..1]	[137..1]
gi\|75239160, gi\|... - gi\|75239160\|ref\|ZP_00723137.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|218699493, gi... - gi\|218699493\|ref\|YP_002407122.1\| flagellar motor switch protein FliN [Escherichia coli IAI39], gi\|21... gi\|218432536, gi... - gi\|218705439\|ref\|YP_002412958.1\| flagellar motor switch protein FliN [Escherichia coli UMN026], gi\|2... gi\|110343644, gi... - gi\|110642052\|ref\|YP_669782.1\| flagellar motor switch protein FliN [Escherichia coli 536], gi\|1103436... gi\|215487146, gi... - gi\|215487146\|ref\|YP_002329577.1\| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. ...	143.0	[0..1]	[137..1]
gi\|24052332, gi\|... - gi\|24113321\|ref\|NP_707831.1\| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301], gi... gi\|30063385, gi\|... - gi\|30063385\|ref\|NP_837556.1\| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T], ... gi\|110805915, gi... - gi\|110805915\|ref\|YP_689435.1\| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401], g...	143.0	[0..1]	[137..1]
gi\|26248215, gi\|... - gi\|26248215\|ref\|NP_754255.1\| flagellar motor switch protein FliN [Escherichia coli CFT073], gi\|26108... gi\|227837198, gi... - gi\|227885625\|ref\|ZP_04003430.1\| flagellar motor switch protein FliN [Escherichia coli 83972], gi\|227...	142.0	[0..1]	[137..1]
gi\|74312486, gi\|... - gi\|74312486\|ref\|YP_310905.1\| flagellar motor switch protein FliN [Shigella sonnei Ss046], gi\|7385596...	142.0	[0..1]	[137..1]
gi\|226900662, gi... - gi\|237705905\|ref\|ZP_04536386.1\| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA], gi\|... gi\|91211164, gi\|... - gi\|91211164\|ref\|YP_541150.1\| flagellar motor switch protein FliN [Escherichia coli UTI89], gi\|910727... gi\|117624086, gi... - gi\|117624086\|ref\|YP_852999.1\| flagellar motor switch protein FliN [Escherichia coli APEC O1], gi\|115... gi\|218558803, gi... - gi\|218558803\|ref\|YP_002391716.1\| flagellar motor switch protein FliN [Escherichia coli S88], gi\|2183...	142.0	[0..1]	[137..1]
gi\|207856510, gi... - gi\|207856510\|ref\|YP_002243161.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=fliN] [protein=flagellar motor switch protein FliN] [protein_id=YP_005237947.1] [location=2075... gi\|205331893, gi... - gi\|205331893\|gb\|EDZ18657.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... gi\|205328440, gi... - gi\|205328440\|gb\|EDZ15204.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... FLIN_SALTY - Flagellar motor switch protein fliN OS=Salmonella typhimurium GN=fliN PE=3 SV=1 gi\|167552790, gi... - gi\|205322614\|gb\|EDZ10453.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... FLIN_SALTY - Flagellar motor switch protein FliN OS=Salmonella typhimurium GN=fliN PE=3 SV=1 gi\|205352329, gi... - gi\|205352329\|ref\|YP_002226130.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|194457251, gi... - gi\|194470887\|ref\|ZP_03076871.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ente... FLIN_SALTY - Flagellar motor switch protein FliN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... gi\|205340673, gi... - gi\|205340673\|gb\|EDZ27437.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... gi\|195634210, gi... - gi\|195634210\|gb\|EDX52562.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica...	137.0	[0..1]	[137..1]
gi\|197093513, gi... - gi\|197362036\|ref\|YP_002141673.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|197241123, gi... - gi\|197262868\|ref\|ZP_03162942.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ente... gi\|197248203, gi... - gi\|197248203\|ref\|YP_002146046.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|194709661, gi... - gi\|194734159\|ref\|YP_002115011.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|194449656, gi... - gi\|194449656\|ref\|YP_002046028.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|194443428, gi... - gi\|194443428\|ref\|YP_002041242.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|205350647, gi... - gi\|205350647\|gb\|EDZ37278.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... gi\|168244828, gi... - gi\|205336349\|gb\|EDZ23113.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... gi\|197288082, gi... - gi\|197288082\|gb\|EDY27469.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica... gi\|161362818, gi... - gi\|161613454\|ref\|YP_001587419.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent... gi\|238912450 - gi\|238912450\|ref\|ZP_04656287.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ente... gi\|62128185, gi\|... - gi\|62180552\|ref\|YP_216969.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enteric... gi\|56127367, gi\|... - gi\|56413110\|ref\|YP_150185.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. enteric... gi\|204931014, gi... - gi\|204931014\|ref\|ZP_03221840.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ente... gi\|199602934, gi... - gi\|200390489\|ref\|ZP_03217100.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ente... gi\|198242746, gi... - gi\|198242746\|ref\|YP_002215109.1\| flagellar motor switch protein FliN [Salmonella enterica subsp. ent...	137.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMNNPADD NNGAMDDLWA EALSEQKSTS SKSAAETVFQ QFGGGDVSGT LQDIDLIMDI  60
   61 PVKLTVELGR TRMTIKELLR LTQGSVVALD GLAGEPLDIL INGYLIAQGE VVVVADKYGV 120
  121 RITDIITPSE RMRRLSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: