YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIG_ECOLI
Organism:	Escherichia coli
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77381767, gi\|... - gi\|77457764\|ref\|YP_347269.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf0-1], gi\|77...	383.0	[0..1]	[329..8]
gi\|125972987, gi... - gi\|67875411\|ref\|ZP_00504751.1\| Flagellar motor switch protein FliG [Clostridium thermocellum ATCC 27...	382.0	[0..2]	[331..9]
gi\|70729031, gi\|... - gi\|70729031\|ref\|YP_258765.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf-5], gi\|683...	380.0	[0..2]	[329..9]
gi\|152987829, gi... - gi\|94415966\|ref\|ZP_01295798.1\| hypothetical protein PaerP_01002295 [Pseudomonas aeruginosa PA7], gi\|...	380.0	[0..2]	[329..8]
gi\|84322094, gi\|... - gi\|84322094\|ref\|ZP_00970439.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa C3719... gi\|254239471, gi... - gi\|84328574\|ref\|ZP_00976578.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa 2192]... gi\|218892934, gi... - gi\|218892934\|ref\|YP_002441803.1\| flagellar motor switch protein G [Pseudomonas aeruginosa LESB58], g... FLIG_PSEAE - Flagellar motor switch protein fliG OS=Pseudomonas aeruginosa GN=fliG PE=3 SV=2 gi\|107100553 - gi\|107100553\|ref\|ZP_01364471.1\| hypothetical protein PaerPA_01001578 [Pseudomonas aeruginosa PACS2] gi\|116049031, gi... - gi\|32041107\|ref\|ZP_00138690.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa UCBPP... FLIG_PSEAE - Flagellar motor switch protein FliG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 1...	379.0	[0..2]	[329..8]
gi\|120554913, gi... - gi\|77953742\|ref\|ZP_00818147.1\| Flagellar motor switch protein FliG [Marinobacter aquaeolei VT8], gi\|...	377.0	[0..3]	[330..19]
gi\|28869163, gi\|... - gi\|28869163\|ref\|NP_791782.1\| flagellar motor protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927861, gi... - gi\|213967560\|ref\|ZP_03395708.1\| flagellar motor switch protein G [Pseudomonas syringae pv. tomato T1... tr\|Q884X7\|Q884X7... - Flagellar motor switch protein FliG OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliG PE=3 ... gi\|71555805, gi\|... - gi\|71735252\|ref\|YP_275540.1\| flagellar motor switch protein G [Pseudomonas syringae pv. phaseolicola...	376.0	[0..1]	[329..2]
gi\|95111807 - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG... gi\|104782820, gi... - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG...	375.0	[0..2]	[329..9]
gi\|63257392, gi\|... - gi\|66046685\|ref\|YP_236526.1\| flagellar motor switch protein G [Pseudomonas syringae pv. syringae B72...	375.0	[0..1]	[329..7]
gi\|91792683, gi\|... - gi\|91792683\|ref\|YP_562334.1\| flagellar motor switch protein G [Shewanella denitrificans OS217], gi\|9...	374.0	[0..3]	[328..18]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLTGTDKS VILLMTIGED RAAEVFKHLS QREVQTLSAA MANVTQISNK QLTDVLAEFE  60
   61 QEAEQFAALN INANDYLRSV LVKALGEERA ASLLEDIL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.47
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETRDTASGIE TLNFMEPQSA ADLIRDEHPQ IIATILVHLK RAQAADILAL FDERLRHDVM  60
   61 LRIATFGGVQ PAALAELTEV LNGLLDGQNL KRSKMGGVRT AAEIINLMKT QQEEAVITAV 120
  121 REFDGELAQK IIDEMFLFEN LVDVDDRSIQ RLLQEVDSES LLIALKGAEQ PLREKFLRNM 180
  181 SQRAADILRD DLANRGPVRL SQVENEQKAI LLIVRRLAET GEMVIGSGED TYV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	2.67404852673323	bayes_pls_golite062009
binding	0.827983811500883	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.809819809521648	bayes_pls_golite062009
pyrophosphatase activity	0.766845130042953	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.747495412028734	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.746509234796674	bayes_pls_golite062009
protein binding	0.331391148906732	bayes_pls_golite062009
hydrolase activity	0.00297875768409188	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: