YRC Public Data Repository - Protein Structure Prediction

Protein:	FLHA_ECOLI
Organism:	Escherichia coli
Length:	692 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLHA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37525819, gi\|... - gi\|37525819\|ref\|NP_929163.1\| flagellar biosynthesis protein FlhA [Photorhabdus luminescens subsp. la...	939.0	[0..1]	[691..1]
gi\|49611157, gi\|... - gi\|50120631\|ref\|YP_049798.1\| flagellar biosynthesis protein FlhA [Pectobacterium atrosepticum SCRI10...	928.0	[0..1]	[690..1]
gi\|3169255 - gi\|3169255\|gb\|AAC17835.1\| flagellar protein FlhA [Escherichia coli]	928.0	[0..1]	[692..1]
gi\|73539438, gi\|... - gi\|73539438\|ref\|YP_299805.1\| flagellar biosynthesis protein FlhA [Ralstonia eutropha JMP134], gi\|721...	926.0	[0..1]	[691..1]
gi\|113528707, gi... - gi\|116694208\|ref\|YP_728419.1\| flagellar biosynthesis protein FlhA [Ralstonia eutropha H16], gi\|11352...	922.0	[0..1]	[691..1]
gi\|117624030, gi... - gi\|117624030\|ref\|YP_852943.1\| flagellar biosynthesis protein FlhA [Escherichia coli APEC O1], gi\|115... gi\|91072677, gi\|... - gi\|91211103\|ref\|YP_541089.1\| flagellar biosynthesis protein FlhA [Escherichia coli UTI89], gi\|910726...	916.0	[0..1]	[692..26]
gi\|26248145, gi\|... - gi\|26248145\|ref\|NP_754185.1\| flagellar biosynthesis protein [Escherichia coli CFT073], gi\|26108549\|g...	914.0	[0..1]	[692..26]
gi\|157158952, gi... - gi\|75190907\|ref\|ZP_00704174.1\| COG1298: Flagellar biosynthesis pathway, component FlhA [Escherichia ... gi\|227837267, gi... - gi\|227885694\|ref\|ZP_04003499.1\| flagellar biosynthesis protein FlhA [Escherichia coli 83972], gi\|227... gi\|162317574 - gi\|162317574\|ref\|YP_852943.2\| flagellar biosynthesis protein FlhA [Escherichia coli APEC O1] gi\|170682236, gi... - gi\|170682236\|ref\|YP_001743366.1\| flagellar biosynthesis protein FlhA [Escherichia coli SMS-3-5], gi\|... gi\|161486203 - gi\|161486203\|ref\|NP_754185.2\| flagellar biosynthesis protein FlhA [Escherichia coli CFT073] gi\|162138425 - gi\|162138425\|ref\|YP_541089.2\| flagellar biosynthesis protein FlhA [Escherichia coli UTI89] gi\|218352177, gi... - gi\|218695445\|ref\|YP_002403112.1\| flagellar biosynthesis protein FlhA [Escherichia coli 55989], gi\|21... gi\|215265163, gi... - gi\|215487091\|ref\|YP_002329522.1\| flagellar biosynthesis protein FlhA [Escherichia coli O127:H6 str. ... gi\|218427440, gi... - gi\|218689876\|ref\|YP_002398088.1\| flagellar biosynthesis protein FlhA [Escherichia coli ED1a], gi\|218...	910.0	[0..1]	[692..1]
gi\|188495210, gi... - gi\|75513025\|ref\|ZP_00735487.1\| COG1298: Flagellar biosynthesis pathway, component FlhA [Escherichia ...	910.0	[0..1]	[692..1]
gi\|168757916, gi... - gi\|189355158\|gb\|EDU73577.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC440... gi\|168747909, gi... - gi\|188017524\|gb\|EDU55646.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC411... gi\|13362057, gi\|... - gi\|15831843\|ref\|NP_310616.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. Saka... gi\|188999454, gi... - gi\|188999454\|gb\|EDU68440.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC407... gi\|187768110, gi... - gi\|187768110\|gb\|EDU31954.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC419... gi\|189360286, gi... - gi\|189360286\|gb\|EDU78705.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC448... gi\|168762324, gi... - gi\|189367332\|gb\|EDU85748.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC450... gi\|254592903, gi... - gi\|254793503\|ref\|YP_003078340.1\| predicted flagellar export pore protein [Escherichia coli O157:H7 s... gi\|25310212, gi\|... - pir\|\|A85801 flagellar biosynthesis protein FlhA [imported] - Escherichia coli (strain O157:H7, subst... gi\|15802291, gi\|... - gi\|15802291\|ref\|NP_288316.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 EDL933], ... gi\|208724881, gi... - gi\|208810365\|ref\|ZP_03252241.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. E... gi\|13362057, gi\|... - gi\|15831843\|ref\|NP_310616.1\| flagellar biosynthesis protein [Escherichia coli O157:H7], gi\|13362057\|... gi\|195939583 - gi\|195939583\|ref\|ZP_03084965.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. E... gi\|168801882, gi... - gi\|189376052\|gb\|EDU94468.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC508... gi\|168789747, gi... - gi\|189370711\|gb\|EDU89127.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. EC869... gi\|217328765, gi... - gi\|217328765\|ref\|ZP_03444846.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. T... gi\|209158103, gi... - gi\|209396703\|ref\|YP_002270963.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. ... gi\|208740495, gi... - gi\|208820372\|ref\|ZP_03260692.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. E... gi\|208731187, gi... - gi\|208816844\|ref\|ZP_03257964.1\| flagellar biosynthesis protein FlhA [Escherichia coli O157:H7 str. E...	910.0	[0..1]	[692..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLAAMLRL PANLKSTQWQ ILAGPILILL ILSMMVLPLP AFILDLLFTF NIALSIMVLL  60
   61 VAMFTQRTLE FAAFPTILLF TTLLRLALNV ASTRIILME

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHTGAAAAGK VVEAFGHFLV GGNFAIGIVV FVILVIINFM VITKGAGRIA EVGARFVLDG  60
   61 MPGKQMAIDA DLNAGLIG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [178-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDEAKKRRSE VTQEADFYGS MDGASKFVRG DAIAGILIMV INIVGGLLVG VLQHGMSMGH  60
   61 AAESYTLLTI GDGLVAQIPA LVISTAAGVI VTRVSTDQDV GEQMVNQLFS NPSVMLLSAA 120
  121 VLGLLGLVPG MPNLVFLLFT AGLLGLAWWI RGREQKAPAE PKPVKMAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [346-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNTVVEATWN DVQLEDSLGM EVGYRLIPMV DFQQDGELLG RIRSIRKKFA QEMGFLPPVV  60
   61 HIRDNMDLQP ARYRILMKGV EIGSGDAYPG RWLAINPGTA AGTLPGEATV DPAFGLNAIW 120
  121 IESALKEQAQ IQGYTVVEAS TVVATHLNHL ISQHAAELFG RQEAQQLLDR VAQEMPKLTE 180
  181 DLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [529-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGVVTLTTLH KVLQNLLDEK VPIRDMRTIL ETLAEHAPIQ SDPHELTAVV RVALGRAITQ  60
   61 QWFPGKDEVH VIGLDTPLER LLLQALQGGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [619-692]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLEPGLADRL LAQTQEALSR QEMLGAPPVL LVNHALRPLL SRFLRRSLPQ LVVLSNLELS  60
   61 DNRHIRMTAT IGGK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits