YRC Public Data Repository - Protein Structure Prediction

Protein:	FARR_ECOLI
Organism:	Escherichia coli
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FARR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89202896, gi\|... - gi\|89202896\|ref\|ZP_01181601.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	216.0	[0..2]	[237..7]
gi\|10173032, gi\|... - gi\|15612982\|ref\|NP_241285.1\| GntR family transcriptional regulator [Bacillus halodurans C-125], gi\|1... gi\|25298828 - pir\|\|C83702 transcription regulator (GntR family) BH0419 [imported] - Bacillus halodurans (strain C-...	214.0	[0..2]	[236..6]
gi\|49478510, gi\|... - gi\|49478510\|ref\|YP_038113.1\| GntR family transcriptional regulator [Bacillus thuringiensis serovar k... gi\|52141439, gi\|... - gi\|52141439\|ref\|YP_085390.1\| GntR family transcriptional regulator [Bacillus cereus E33L], gi\|519749... gi\|47504713, gi\|... - gi\|47529565\|ref\|YP_020914.1\| GntR family transcriptional regulator [Bacillus anthracis str. 'Ames An... gi\|49186961, gi\|... - gi\|49186961\|ref\|YP_030213.1\| GntR family transcriptional regulator [Bacillus anthracis str. Sterne],... gi\|47565935, gi\|... - gi\|47565935\|ref\|ZP_00236974.1\| transcriptional regulator, GntR family [Bacillus cereus G9241], gi\|47... gi\|30258774, gi\|... - gi\|30264129\|ref\|NP_846506.1\| GntR family transcriptional regulator [Bacillus anthracis str. Ames], g... gi\|254721656 - gi\|254721656\|ref\|ZP_05183445.1\| GntR family transcriptional regulator [Bacillus anthracis str. A1055... gi\|254683821 - gi\|254683821\|ref\|ZP_05147681.1\| GntR family transcriptional regulator [Bacillus anthracis str. CNEVA... gi\|254744057 - gi\|254744057\|ref\|ZP_05201740.1\| GntR family transcriptional regulator [Bacillus anthracis str. Kruge... gi\|254736167 - gi\|254736167\|ref\|ZP_05193873.1\| GntR family transcriptional regulator [Bacillus anthracis str. Weste... gi\|254758146 - gi\|254758146\|ref\|ZP_05210173.1\| GntR family transcriptional regulator [Bacillus anthracis str. Austr... gi\|254754164 - gi\|254754164\|ref\|ZP_05206199.1\| GntR family transcriptional regulator [Bacillus anthracis str. Vollu...	214.0	[0..2]	[237..7]
gi\|56380652, gi\|... - gi\|56420810\|ref\|YP_148128.1\| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	212.0	[0..2]	[239..6]
gi\|30022140, gi\|... - gi\|30022140\|ref\|NP_833771.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	211.0	[0..2]	[237..9]
gi\|42739095, gi\|... - gi\|42783167\|ref\|NP_980414.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 10987], gi\|... gi\|118418482, gi... - gi\|118479257\|ref\|YP_896408.1\| GntR family transcriptional regulator [Bacillus thuringiensis str. Al ...	210.0	[0..2]	[237..12]
gi\|163863991, gi... - gi\|89206714\|ref\|ZP_01185268.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	210.0	[0..2]	[237..7]
gi\|52082624, gi\|... - gi\|52788022\|ref\|YP_093851.1\| YvoA [Bacillus licheniformis ATCC 14580], gi\|52350524\|gb\|AAU43158.1\| Yv...	201.0	[0..2]	[237..6]
gi\|183224270, gi... - gi\|89091630\|ref\|ZP_01164617.1\| regulatory protein GntR, HTH [Lactobacillus reuteri JCM 1112], gi\|890... gi\|227532687, gi... - gi\|227532687\|ref\|ZP_03962736.1\| GntR family transcriptional regulator [Lactobacillus reuteri MM4-1A]... gi\|227363525, gi... - gi\|227363525\|ref\|ZP_03847645.1\| GntR family transcriptional regulator [Lactobacillus reuteri MM2-3],... gi\|194468063, gi... - gi\|194468063\|ref\|ZP_03074049.1\| transcriptional regulator, GntR family [Lactobacillus reuteri 100-23...	201.0	[0..1]	[233..1]
gi\|56909496, gi\|... - gi\|56963253\|ref\|YP_174984.1\| GntR family transcriptional regulator [Bacillus clausii KSM-K16], gi\|56...	199.0	[0..2]	[236..6]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHKPLYRQI ADRIREQIAR GELKPGDALP TESALQTEFG VSRVTVRQAL RQLVEQQILE  60
   61 SIQGSGTYVK EERVNYDIFQ LTSFDEKLSD RHVDTHSEVL IFEVIPADDF LQQQLQITPQ 120
  121 DRVWHVKRVR YRKQKPMALE ETWMPLALFP DLTWQVMENS KYHFIEEVKK MVIDRSEQEI 180
  181 IPLMPTEEMS RLLNISQTKP ILEKVSRGYL VDGRVFEYSR NAFNTDDYKF TLIAQRKSSR 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2ra5A
Description:	No description for 2ra5A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.67337973971815	bayes_pls_golite062009
DNA binding	2.4285792703914	bayes_pls_golite062009
transcription factor activity	2.41410286768641	bayes_pls_golite062009
nucleic acid binding	2.36311807645798	bayes_pls_golite062009
binding	1.53283393165662	bayes_pls_golite062009
catalytic activity	0.43947186099223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: