YRC Public Data Repository - Protein Structure Prediction

Protein:	EUTD_ECOLI
Organism:	Escherichia coli
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EUTD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78358281, gi\|... - gi\|78358281\|ref\|YP_389730.1\| phosphate acetyltransferase [Desulfovibrio desulfuricans subsp. desulfu...	342.0	[0..1]	[327..392]
gi\|120601394, gi... - gi\|120601394\|ref\|YP_965794.1\| phosphate acetyltransferase [Desulfovibrio vulgaris subsp. vulgaris DP... gi\|241908527, gi... - gi\|241908527\|ref\|ZP_04793094.1\| phosphate acetyltransferase [Desulfovibrio vulgaris RCH1], gi\|241879... PTA_DESVH - Phosphate acetyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 830...	341.0	[0..1]	[327..377]
gi\|86142732, gi\|... - gi\|86142732\|ref\|ZP_01061171.1\| phosphate acetyltransferase [Flavobacterium sp. MED217], gi\|85830764\|... gi\|86142732, gi\|... - gi\|86142732\|ref\|ZP_01061171.1\| phosphate acetyltransferase [Flavobacterium sp. MED217], gi\|85830764\|...	329.0	[0..1]	[325..372]
gi\|23092549 - gi\|23092549\|gb\|AAN08360.1\| phosphotransacetylase [Photorhabdus temperata] gi\|23092549\|gb\|A... - phosphotransacetylase [Photorhabdus temperata]	329.0	[0..2]	[327..385]
gi\|91793762, gi\|... - gi\|91793762\|ref\|YP_563413.1\| phosphate acetyltransferase [Shewanella denitrificans OS217], gi\|917157...	328.0	[0..2]	[329..391]
gi\|114563647, gi... - gi\|69951551\|ref\|ZP_00639260.1\| Phosphate acetyltransferase [Shewanella frigidimarina NCIMB 400], gi\|...	328.0	[0..2]	[329..391]
gi\|106883388, gi... - gi\|119946918\|ref\|YP_944598.1\| phosphate acetyltransferase [Psychromonas ingrahamii 37], gi\|119865522...	327.0	[0..2]	[332..391]
gi\|220931863, gi... - gi\|89211635\|ref\|ZP_01189989.1\| Phosphate acetyltransferase [Halothermothrix orenii H 168], gi\|891587...	327.0	[0..2]	[326..3]
gi\|25286366 - pir\|\|G84127 phosphotransacetylase pta [imported] - Bacillus halodurans (strain C-125) gi\|10176448, gi\|... - gi\|15616385\|ref\|NP_244690.1\| phosphotransacetylase [Bacillus halodurans C-125], gi\|10176448\|dbj\|BAB0...	327.0	[0..2]	[329..4]

Back

Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIERCRELA LRAPARVVFP DALDQRVLKA AQYLHQQGLA TPILVANPFE LRQFALSHGV  60
   61 AMDGLQVIDP HGNLAMREEF AHRWLARAGE KTPPDALEKL TDPLMFAAAM VSAGKADVCI 120
  121 AGNLSSTANV LRAGLRIIGL QPGCKTLSSI FLMLPQYSGP ALGFADCSVV PQPTAAQLAD 180
  181 IALASAETWR AITGEEPRVA MLSFSSNGSA RHPCVANVQQ ATEIVRERAP KLVVDGELQF 240
  241 DAAFVPEVAA QKAPASPLQG KANVMVFPSL EAGNIGYKIA QRLGGYRAVG PLIQGLAAPM 300
  301 HDLSRGCSVQ EIIELALVAA VPRQTEVNRE SSLQTLVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	1vmiA
Description:	Crystal structure of Putative phosphate acetyltransferase (np_416953.1) from Escherichia coli k12 at 2.32 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	3.23390318382614	bayes_pls_golite062009
catalytic activity	3.08295953338337	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	1.9222343186159	bayes_pls_golite062009
phosphate acetyltransferase activity	1.74012698942695	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	1.7326477726595	bayes_pls_golite062009
oxidoreductase activity	1.60089239108254	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.58576093894687	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.57480869322386	bayes_pls_golite062009
acetyltransferase activity	0.77398130301043	bayes_pls_golite062009
3-isopropylmalate dehydrogenase activity	0.12718051238769	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: