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View Structure Prediction Details

Protein: SO0369
Organism: Shewanella oneidensis
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0369.

Description E-value Query
Range
Subject
Range
gi|28900071, gi|... - gi|28900071|ref|NP_799726.1| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ...
gi|28808354 - gi|28808354|dbj|BAC61559.1| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...
315.0 [0..1] [293..1]
gi|91191158, gi|... - gi|91224247|ref|ZP_01259510.1| putative transcription regulator protein [Vibrio alginolyticus 12G01]...
314.0 [0..1] [293..1]
gi|116185384, gi... - gi|75856032|ref|ZP_00763668.1| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi|254227935|re...
312.0 [0..1] [293..1]
gi|114045851, gi... - gi|78689367|ref|ZP_00854030.1| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi|7851...
312.0 [0..1] [293..1]
gi|117614564, gi... - gi|78685922|ref|ZP_00850696.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi|785...
307.0 [0..1] [293..1]
gi|27367995, gi|... - gi|27367995|ref|NP_763522.1| transcriptional regulator [Vibrio vulnificus CMCP6], gi|27359568|gb|AAO...
307.0 [0..4] [293..5]
gi|82406257, gi|... - gi|82495665|ref|ZP_00881239.1| transcriptional regulator, LysR family [Shewanella sp. MR-4], gi|8240...
307.0 [0..1] [293..1]
gi|37200667, gi|... - gi|37676126|ref|NP_936522.1| transcriptional regulator [Vibrio vulnificus YJ016], gi|37200667|dbj|BA...
306.0 [0..4] [293..5]
gi|87118407, gi|... - gi|87118407|ref|ZP_01074306.1| putative transcription regulator protein [Marinomonas sp. MED121], gi...
300.0 [0..1] [294..1]
gi|82719568, gi|... - gi|82743075|ref|ZP_00905742.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1], gi|8...
300.0 [0..1] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHFSALPIF VTVVECGSFS LAGQKLGLSK SAISKRISQL EQHLGIQLLQ RTTRSLSLTD  60
   61 AGARYFEYIR PAVQLTQEGL DAISELQQTP RGNLRISVPM VFGRLYIAPL IAEFLKRYPD 120
  121 IQLQMQMDDK ITDLIAGGFD LAIRIGELPD SSLIARKIAP CLSVICASPA YLTQHGLPMT 180
  181 PCELTQHNCL FYSYFQDGVE WSFHSPDGMQ RVQPKGNYQV NNSDAINQAC LDGLGIANLP 240
  241 RFIVEPDLQT GHLQALLTDY PLPEHGIYAV YPQRKYQPTK VTVLIEFLMA KLGQY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 1al3A
Description: COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.06846313752146 bayes_pls_golite062009
transcription factor activity 1.54776226622667 bayes_pls_golite062009
DNA binding 1.53867658911479 bayes_pls_golite062009
nucleic acid binding 1.45471488657915 bayes_pls_golite062009
binding 1.29220115989941 bayes_pls_golite062009
catalytic activity 1.04475291968158 bayes_pls_golite062009
protein binding 0.0639574144110515 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle