YRC Public Data Repository - Protein Structure Prediction

Protein:	DTD_ECOLI
Organism:	Escherichia coli
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTD_ECOLI.

Description	E-value	Query Range	Subject Range
DTD_THEMA - D-tyrosyl-tRNA(Tyr) deacylase OS=Thermotoga maritima GN=dtd PE=3 SV=1 DTD_THEMA - D-aminoacyl-tRNA deacylase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) ...	242.0	[0..1]	[144..1]
DTD_THEAQ - D-aminoacyl-tRNA deacylase OS=Thermus aquaticus GN=dtd PE=3 SV=2	241.0	[0..1]	[144..1]
DTD_BACCN - D-aminoacyl-tRNA deacylase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391...	241.0	[0..1]	[144..1]
DTD_GEOKA - D-aminoacyl-tRNA deacylase OS=Geobacillus kaustophilus (strain HTA426) GN=dtd PE=3 SV=1 DTD_GEOKA - D-tyrosyl-tRNA(Tyr) deacylase OS=Geobacillus kaustophilus GN=dtd PE=3 SV=1	240.0	[0..1]	[144..1]
DTD_GEOSL - D-aminoacyl-tRNA deacylase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=dtd ... DTD_GEOSL - D-tyrosyl-tRNA(Tyr) deacylase OS=Geobacter sulfurreducens GN=dtd PE=3 SV=1	240.0	[0..1]	[144..1]
gi\|47556625, gi\|... - gi\|47566595\|ref\|ZP_00237417.1\| D-tyrosyl-tRNA(tyr) deacylase [Bacillus cereus G9241], gi\|47556625\|gb... gi\|228608376, gi... - gi\|229175080\|ref\|ZP_04302597.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus MM3], gi\|228608376\|gb...	239.0	[0..1]	[144..1]
DTD_BACC1 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=dtd PE=3 SV=1 gi\|228585036, gi... - gi\|229198533\|ref\|ZP_04325237.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus m1293], gi\|228585036\|... DTD_BACCQ - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain Q1) GN=dtd PE=3 SV=1 gi\|229141145, gi... - gi\|229141145\|ref\|ZP_04269686.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-ST26], gi\|228642... gi\|229163354, gi... - gi\|229163354\|ref\|ZP_04291306.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus R309803], gi\|22862013... DTD_BACCZ - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ZK / E33L) GN=dtd PE=3 SV=1 DTD_BACC7 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain AH187) GN=dtd PE=3 SV=1 gi\|228935726, gi... - gi\|228935726\|ref\|ZP_04098539.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar andalo... gi\|206745771, gi... - gi\|206976019\|ref\|ZP_03236929.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus H3081.97], gi\|2067457... gi\|228659249, gi... - gi\|229123947\|ref\|ZP_04253139.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus 95/8201], gi\|22865924...	239.0	[0..1]	[144..1]
gi\|206735395, gi... - gi\|206969707\|ref\|ZP_03230661.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH1134], gi\|206735395... DTD_BACCR - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / ... gi\|228954690, gi... - gi\|228954690\|ref\|ZP_04116713.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar kursta... gi\|228818081, gi... - gi\|228941574\|ref\|ZP_04104122.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar berlin... gi\|228923158, gi... - gi\|228923158\|ref\|ZP_04086449.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar huazho... gi\|228701674, gi... - gi\|229081670\|ref\|ZP_04214165.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock4-2], gi\|22870167... gi\|228981097, gi... - gi\|228981097\|ref\|ZP_04141398.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis Bt407], gi\|228... gi\|228974503, gi... - gi\|228974503\|ref\|ZP_04135070.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar thurin... gi\|228960679, gi... - gi\|228960679\|ref\|ZP_04122323.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar pakist... gi\|228602827, gi... - gi\|229180682\|ref\|ZP_04308022.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus 172560W], gi\|22860282... gi\|228636474, gi... - gi\|229146977\|ref\|ZP_04275339.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-ST24], gi\|228636... gi\|228653803, gi... - gi\|229129686\|ref\|ZP_04258654.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-Cer4], gi\|228653... gi\|228671634, gi... - gi\|229111878\|ref\|ZP_04241424.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock1-15], gi\|2286716... gi\|228590924, gi... - gi\|229192617\|ref\|ZP_04319578.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus ATCC 10876], gi\|22859...	239.0	[0..1]	[144..1]
DTD_BACWK - D-aminoacyl-tRNA deacylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dtd PE=3 SV=1 gi\|228717253, gi... - gi\|229062101\|ref\|ZP_04199426.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH603], gi\|228717253\|... gi\|228747682, gi... - gi\|229013623\|ref\|ZP_04170754.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus mycoides DSM 2048], gi\|22874... gi\|229169149, gi... - gi\|229169149\|ref\|ZP_04296864.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH621], gi\|228614377\|...	238.0	[0..1]	[144..1]
DTD_BACC2 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain G9842) GN=dtd PE=3 SV=1 gi\|228856718, gi... - gi\|228902934\|ref\|ZP_04067075.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis IBL 4222], gi\|... gi\|74491944, gi\|... - gi\|75760575\|ref\|ZP_00740608.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar israele...	238.0	[0..1]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIALIQRVTR ASVTVEGEVT GEIGAGLLVL LGVEKDDDEQ KANRLCERVL GYRIFSDAEG  60
   61 KMNLNVQQAG GSVLVVSQFT LAADTERGMR PSFSKGASPD RAEALYDYFV ERCRQQEMNT 120
  121 QTGRFAADMQ VSLVNDGPVT FWLQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	1jkeA
Description:	D-Tyr tRNAtyr deacylase, DTD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-aminoacyl-tRNA deacylase activity	3.18961517124283	bayes_pls_golite062009
aminoacyl-tRNA hydrolase activity	1.43757039704554	bayes_pls_golite062009
binding	1.3045500909074	bayes_pls_golite062009
hydrolase activity	1.17585832767276	bayes_pls_golite062009
catalytic activity	1.08855907125654	bayes_pls_golite062009
D-tyrosyl-tRNA(Tyr) deacylase activity	1.06684792922359	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.793555513343425	bayes_pls_golite062009
carboxylesterase activity	0.273763624470875	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: