YRC Public Data Repository - Protein Structure Prediction

Protein:	DEOB_ECOLI
Organism:	Escherichia coli
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77973608, gi\|... - gi\|77973608\|ref\|ZP_00829154.1\| COG1015: Phosphopentomutase [Yersinia frederiksenii ATCC 33641], gi\|2...	533.0	[0..1]	[407..6]
gi\|77959705, gi\|... - gi\|77959705\|ref\|ZP_00823722.1\| COG1015: Phosphopentomutase [Yersinia bercovieri ATCC 43970], gi\|2387...	531.0	[0..1]	[407..1]
gi\|89104402 - gi\|89104402\|ref\|ZP_01176946.1\| COG1015: Phosphopentomutase [Yersinia pestis biovar Orientalis str. I... gi\|21960723, gi\|... - gi\|22127613\|ref\|NP_671036.1\| phosphopentomutase [Yersinia pestis KIM], gi\|21960723\|gb\|AAM87287.1\|AE0... gi\|45438344, gi\|... - gi\|45443475\|ref\|NP_995014.1\| phosphopentomutase [Yersinia pestis biovar Microtus str. 91001], gi\|454...	529.0	[0..1]	[407..23]
gi\|117674938, gi... - gi\|77631569\|ref\|ZP_00794155.1\| COG1015: Phosphopentomutase [Yersinia pseudotuberculosis IP 31758], g...	529.0	[0..1]	[407..23]
DEOB_YERP3 - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=deoB PE=3 SV=1 DEOB_YERPS - Phosphopentomutase OS=Yersinia pseudotuberculosis GN=deoB PE=3 SV=1 DEOB_YERPS - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=deoB PE=3 SV=1 DEOB_YERPB - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=deoB PE=3 SV=1 DEOB_YERPY - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=deoB PE=3 SV=1	527.0	[0..1]	[407..1]
gi\|218927638, gi... - gi\|218927638\|ref\|YP_002345513.1\| phosphopentomutase [Yersinia pestis CO92], gi\|16120770\|ref\|NP_40408... gi\|229705923, gi... - gi\|229836980\|ref\|ZP_04457145.1\| phosphopentomutase [Yersinia pestis Pestoides A], gi\|229705923\|gb\|EE... gi\|229842402, gi... - gi\|229842402\|ref\|ZP_04462557.1\| phosphopentomutase [Yersinia pestis biovar Orientalis str. India 195... gi\|229696689, gi... - gi\|229840323\|ref\|ZP_04460482.1\| phosphopentomutase [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|165915624, gi... - gi\|165936508\|ref\|ZP_02225076.1\| phosphopentomutase [Yersinia pestis biovar Orientalis str. IP275], g... gi\|165927343, gi... - gi\|165927343\|ref\|ZP_02223175.1\| phosphopentomutase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|167054950, gi... - gi\|167426027\|ref\|ZP_02317780.1\| phosphopentomutase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|166962730, gi... - gi\|167418736\|ref\|ZP_02310489.1\| phosphopentomutase [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|167049906, gi... - gi\|167400538\|ref\|ZP_02306047.1\| phosphopentomutase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|166008988, gi... - gi\|166008988\|ref\|ZP_02229886.1\| phosphopentomutase [Yersinia pestis biovar Antiqua str. E1979001], g... DEOB_YERPE - Phosphopentomutase OS=Yersinia pestis GN=deoB PE=3 SV=1 DEOB_YERPA - Phosphopentomutase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=deoB PE=3 SV=1 DEOB_YERPN - Phosphopentomutase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=deoB PE=3 SV=1 gi\|150260523, gi... - gi\|150260523\|ref\|ZP_01917251.1\| phosphopentomutase [Yersinia pestis CA88-4125], gi\|149289931\|gb\|EDM4... DEOB_YERPP - Phosphopentomutase OS=Yersinia pestis (strain Pestoides F) GN=deoB PE=3 SV=1	527.0	[0..1]	[407..1]
gi\|77977212, gi\|... - gi\|77977212\|ref\|ZP_00832667.1\| COG1015: Phosphopentomutase [Yersinia intermedia ATCC 29909], gi\|2387...	527.0	[0..1]	[407..20]
gi\|77635643 - gi\|77635643\|ref\|ZP_00797725.1\| COG1015: Phosphopentomutase [Yersinia pestis Angola]	526.0	[0..1]	[407..23]
gi\|77960325, gi\|... - gi\|77960325\|ref\|ZP_00824202.1\| COG1015: Phosphopentomutase [Yersinia mollaretii ATCC 43969], gi\|2387...	521.0	[0..1]	[407..1]
DEOB_PHOLL - Phosphopentomutase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT0... DEOB_PHOLL - Phosphopentomutase OS=Photorhabdus luminescens subsp. laumondii GN=deoB PE=3 SV=1	520.0	[0..1]	[407..1]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAFIMVLD SFGIGATEDA ERFGDVGADT LGHIAEACAK GEADNGRKGP LNLPNLTRLG  60
   61 LAKAHEGSTG FIPAGMDGNA EVIGAYAWAH EMSSGKDTPS GHWEIAGVPV LFEWGYFSDH 120
  121 ENSFPQELLD KLVERANLPG YLGNCHSSGT VILDQLGEEH MKTGKPIFYT SADSVFQIAC 180
  181 HEETFGLDKL YELCEIAREE LTNGGYNIGR VIARPFIGDK AGNFQRTGNR HDLAVEPPAP 240
  241 TVLQKLVDEK HGQVVSVGKI ADIYANCGIT KKVKATGLDA LFDATIKEMK EAGDNTIVFT 300
  301 NFVDFDSSWG HRRDVAGYAA GLELFDRRLP ELMSLLRDDD ILILTADHGC DPTWTGTDHT 360
  361 REHIPVLVYG PKVKPGSLGH RETFADIGQT LAKYFGTSDM EYGKAMF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2i09A
Description:	No description for 2i09A was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on ester bonds	1.7864683378766	bayes_pls_golite062009
hydrolase activity	1.70198188398642	bayes_pls_golite062009
catalytic activity	1.00294942392567	bayes_pls_golite062009
binding	0.177105413286598	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: